HsaEX1026781 @ hg38
Exon Skipping
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31144905-31146416:-
Coord C1 exon
chr12:31146362-31146416
Coord A exon
chr12:31145410-31145555
Coord C2 exon
chr12:31144905-31145054
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTCGTCTCCTATTTACACAGCCT
3' ss Score
6.07
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
ATGATGGTAAAAGGAGCTATCTTACTCAGTGGACAAAAGGAAATCAGAAACAAAG
Seq A exon
CCTGGAATGGAAACTTCTCGTTCCCACTCAGCATCAGTGCTGATCTGGCTCCTGCAGCCGTCCTGTTTGTCTACACCCTTCACCCCAGTGGGGAAATTGTGGCTGACAGTGTCAGATTCCAGGTTGACAAGTGCTTTAAACACAAG
Seq C2 exon
GTTAACATAAAGTTCTCTAACGAGCAGGGCTTACCTGGTTCCAATGCTAGTCTCTATCTTCAAGCGGCGCCTGTCTTATTCTGTGCCCTCGGGGCTGTGGATGGGAACGTCCTTCTACTGAAATCTGAACAACAGCTGTCAGCTGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF077039=A2M_N_2=FE(43.3=100)
C2:
PF077039=A2M_N_2=PD(26.0=78.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAAAAGGAGCTATCTTACTCAGT
R:
GCTGACAGCTGTTGTTCAGAT
Band lengths:
194-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains