HsaEX1026787 @ hg38
Exon Skipping
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25128]
Coordinates
chr3:16303408-16338316:+
Coord C1 exon
chr3:16303408-16303592
Coord A exon
chr3:16319461-16319836
Coord C2 exon
chr3:16337112-16338316
Length
376 bp
Sequences
Splice sites
3' ss Seq
ATGGTTGTCTCTACCTCCAGGGC
3' ss Score
9.89
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AAGGAAGAATAACGGAGAAGGAGATAAGAGATCATATTTCAAAAGAGACTTTGTTCTATATTTGTGGCCCACCTCCAATGACAGACTTTTTCTCCAAGCAACTGGAAAACAACCATGTACCCAAAGAACACATTTGCTTTGAGAAGTGGTGGTAGGAGGCAGACAAAGGCAGAAAAAATAAAGAG
Seq A exon
GGCTGCGGTGCACACCTCCAGGGCCCCATTCATATTGTATTTGATGTGAATAGCGCCCTCTGCTGTTGTGCAGTGTACAACTGAGGACAATTCCACCACGTGCTAGACCTTCCATCTAATATGAGCCCAGATACTCTCTCCGGGGCTGCTCTTGCTAAATAACAGAGCTTCCATAGTTTCCCCTGGATGCCTGGCCACATCCAGTTTCCTGTAGAAGATCACATCTTGTTGATCTGCTGATATAATACAAAACGAGAACACAAATGGTAGAAAACAAACAACAAAAACTGTTTCAGATCCCAACAATTCAAAAAGGAGACGTCTCAGAAAGCAAGAGGAGGCCTGGACTGTGCCAGATTTCAGTTGAGCCTCTGAG
Seq C2 exon
GAACCCTGCCTACGCCATGAGGACAGGCCCAGGCTAGCCTTCGGATGATGAGAGACCTGTGGCCCTGCTAAGCAGCAGACGTGAGAGATGCCATCTTGGAGCTGCTAGCTGTGGTCCACCCATCAGCGCCTGCAGGCACATGCTGAGATTAGTCGATTTCCTAAAAGTTGAAGGAAAAATCACCCAGCTGACCTGTTTGGGTTATGATTTTAACTCACTAAGCTTTGGGGAGCTTTATTACACAGCAGAAGCTAACTGGTGTATTACTATTATTACTATTATTCTAAGAACCAAATACCAGGCAAACCTCTAGGAGGAAAATTGTAATGAAAGTCACCTCATTGATTTGTGGCCGGGCTCAGTGGCTCACGCCTGTAATCTCTGCACTTTGGGAGGCAGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCACCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCCAAGCATGGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814_MULTIEX1-1/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=PD(26.4=61.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACCTCCAATGACAGACT
R:
GCTCCCCAAAGCTTAGTGAGT
Band lengths:
352-728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains