HsaEX1026788 @ hg38
Exon Skipping
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25128]
Coordinates
chr3:16303408-16338316:+
Coord C1 exon
chr3:16303408-16303592
Coord A exon
chr3:16322397-16322534
Coord C2 exon
chr3:16337112-16338316
Length
138 bp
Sequences
Splice sites
3' ss Seq
TACTTGATGCTCCTTCCCAGGGC
3' ss Score
6.47
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
AAGGAAGAATAACGGAGAAGGAGATAAGAGATCATATTTCAAAAGAGACTTTGTTCTATATTTGTGGCCCACCTCCAATGACAGACTTTTTCTCCAAGCAACTGGAAAACAACCATGTACCCAAAGAACACATTTGCTTTGAGAAGTGGTGGTAGGAGGCAGACAAAGGCAGAAAAAATAAAGAG
Seq A exon
GGCTCTGTGTCCAAAGAACATGAGGAACCAAGCGTGAGGAATGCAGGAGTGATGCCAGGAGTGAGGAGCCGAGCAGGTCAGGCAGGCCCTGCCGAGAATGTGGCCTCAGCCATCAAAGGTGCAGTGAGCTGAATCCAG
Seq C2 exon
GAACCCTGCCTACGCCATGAGGACAGGCCCAGGCTAGCCTTCGGATGATGAGAGACCTGTGGCCCTGCTAAGCAGCAGACGTGAGAGATGCCATCTTGGAGCTGCTAGCTGTGGTCCACCCATCAGCGCCTGCAGGCACATGCTGAGATTAGTCGATTTCCTAAAAGTTGAAGGAAAAATCACCCAGCTGACCTGTTTGGGTTATGATTTTAACTCACTAAGCTTTGGGGAGCTTTATTACACAGCAGAAGCTAACTGGTGTATTACTATTATTACTATTATTCTAAGAACCAAATACCAGGCAAACCTCTAGGAGGAAAATTGTAATGAAAGTCACCTCATTGATTTGTGGCCGGGCTCAGTGGCTCACGCCTGTAATCTCTGCACTTTGGGAGGCAGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCACCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCCAAGCATGGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814_MULTIEX1-2/5=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=PD(26.4=61.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGTGGTAGGAGGCAGA
R:
CAAACAGGTCAGCTGGGTGAT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains