HsaEX1028480 @ hg38

Exon Skipping

Gene

ENSG00000178209 | PLEC

Description

plectin [Source:HGNC Symbol;Acc:HGNC:9069]

Coordinates

chr8:143918295-143926882:-

Coord C1 exon

chr8:143926784-143926882

Coord A exon

chr8:143922126-143922395

Coord C2 exon

chr8:143918295-143918468

Length

270 bp

Sequences

Splice sites

3' ss Seq

CACACCCTCTTCTTCTGCAGATG

3' ss Score

11.73

5' ss Seq

GGCGTGCGG

5' ss Score

-1.98

Exon sequences

Seq C1 exon

TACGTGGACCTGCGTACGCACTACAGCGAGCTGACCACACTGACGAGCCAGTACATCAAGTTCATCAGCGAGACTCTGCGGCGCATGGAGGAGGAGGAG

Seq A exon

ATGCAGACGGTGCAGCAGGAGCAGCTGCTGCAGGAGACGCAGGCCCTGCAGCAAAGCTTCCTCTCTGAAAAGGACAGCCTGCTACAGCGGGAGCGCTTCATCGAGCAGGAGAAGGCCAAGCTGGAGCAGCTCTTCCAGGACGAGGTGGCCAAGGCACAGCAGCTGCGTGAGGAGCAGCAGCGGCAGCAGCAGCAGATGGAGCAGGAACGGCAGCGGCTGGTGGCCAGCATGGAGGAGGCGCGGCGGCGGCAGCATGAGGCCGAGGAGGGC

Seq C2 exon

GCCATGAAGAAGGAGCTGATCCCTACTGAGGAGGCCCTGCGGCTGCTGGATGCCCAGCTGGCCACCGGCGGCATCGTGGACCCCCGCCTGGGCTTCCACCTTCCCCTGGAGGTGGCTTACCAGCGTGGCTACCTCAACAAGGACACGCACGACCAGCTGTCAGAGCCCAGCGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000178209_MULTIEX1-4/4=C1-C2

Average complexity

C3*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.067 A=0.162 C2=NA

Domain overlap (PFAM):

C1:

NO

A:

PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.0),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.8),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.7),PF0068115=Plectin=WD(100=1.5),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2)

C2:

NA

Main Inclusion Isoform:

ENSP00000433982