DreEX6039249 @ danRer10
Exon Skipping
Gene
ENSDARG00000021987 | plecb
Description
plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
Coordinates
chr16:5583392-5596925:+
Coord C1 exon
chr16:5583392-5586745
Coord A exon
chr16:5586979-5593982
Coord C2 exon
chr16:5596830-5596925
Length
7004 bp
Sequences
Splice sites
3' ss Seq
CATGATTTCTTCTTTTACAGATG
3' ss Score
11.21
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AAAAGATGCTTAAAGAAAAGATGCAAGCCATTCAGGAGGCGTCTAAGCTTAGAGCAGAGGCAGAAATGTTACAGAGACAGAAGGACCTTGCTCAAGAGCAAGCTCAAAGGCTACTTGAAGACAAACAACTGATGCAACAACGGCTCAAGGAGGAAACTGAAGGCTTCCAAAAATCATTGGAGGCTGAACGCCGAAGACAGTTGGATATAGCAGCTGAGGCAGAGAGACTTAGACTTCAGGTGTCCCAGCTCAGTGATGCACAGTCTAGAGCTGAGGATGAAGCCAAGAGGTTCAAGAAGCAGGCAGATGATATTAGTGCACGGCTGCATGAGACAGAGCTTTCCACCAAAGAGAGAATGACAGTTGTTGAAAAATTGGAAATACAAAGACTGAGCAGTACCAGAGAAGCTGATGACTTACGCAAAGCCATAGCTGATCTTGAAAACGAGAAGGCAAAATTGAAAAAAGATGCCGAAGATTTACAGAAAAAGTCTAAAGAG
Seq A exon
ATGGTGAATGCTCAGCAAGAACAAATTAAACAGGAGAAAACAATCCTCCAGCAGACATTTATGTCGGAAAAAGAGATGCTGTTGAAGAAGGAAAAACAAATAGAAGATGAAAAGAAGAGGTTAGAGAGTCAATTTGAAGAGGAGGTCAGAAAATCAAAAGCCCTAAAAGATGAGCAAGAACGCCAAAGAAAACAAATGGAGGATGAAAAGATAAAACTCAAGGCCTCTATGGATGCTGCTCTGATAAAACAAAAAGAGGCTGAAAAAGAGATGTTCAACAAACAAAAGGAGATGCAGGAGCTTGAAAGGAAAAAGCTTGAACAAGAAAGGATGCTTGCTGAGGAAAACCAACAACTGCGTGAGAAACTTCAGCAGCTTGAGGTTGCTCAAAAAATCACCCAGGAGATTCATATCCAGACTGATTGCAAGAAAGTCCTCAATGGTCAAAGTATTGAGGTTGACGGCACACAGGGTTATCCTGGATTATCTTTTGATGGAATTCGTGAGAAAGTGCCTGCAAGCAGACTGTTTGACATAGGACTTTTAAGCAAAGTGGATTATGATAGACTCCAGAGTGGTGGCACCACTGTCCAAGAACTTAGCAAGACAGACAAACTTAAAACAATTCTTAGGGGCAATAACTGCATCAGTGGCTTGCTTGTTCATCCAAATCAAAAAATGCCTATATATCAAGCCATCAAAGAAAAGAAGATTGCTCCTGGTACTGGGCTAGTGCTGCTAGAAGCACAGGCTGCTTCAGGATATATAATCGACCCAATTAAAAACAAGAAACTCTCTGTCAATGAGGCAGTTAAGGAGGGTCTAATTGGACCTGAACTACACAACAAGATGCTGTCTGCAGAGAAAGCTGTCACTGGTTACAAAGATCCATACACAGAGGCTAAGATCTCCCTCTTTGAAGCTTTGAAGAAAGATCTCATTGGGCAGGATCATGCTATCAGATTGCTGGATGCTCAGATAGCAACAGGTGGTATCATTGATCCCATCAACAGTCATCGTGTGCCAAACGAAATAGCCTATAAGCAGGGTCAGTTTGATGCAGCCACCAATAAAATCCTACAAAATCCAACAGATGACATGAAGGGATTCTACGATCCAAACACAGAAGAGAATCTGACATACAGTCAGCTAATGAAAAGGTGTGTCGCTGATCCAGAAACAGGTCTGCCTCTTTTGCCCATCTCTGAGGAGGCTGCACAAAATGCCAGAATATTCACTGATGAAGAAACAAGAGATGTGTTTGACAAGACAACAGTGTCTGTGCCATTCGGCAGATTTAAAGGAAAGACTGTTACCATCTGGGAGATAATAAACTCTGAGTACTTCACCGAGGACCAGAAAAAAGACCTCATCCGCCAGTACAAAACTGGTAGGATTACAGTTGAAAAGATTATCAGAATTGTCCTAACTGTGGCAGAGGAAAAAGAGAAGAAGAATGAGATTGCCTTTGATGGCCTGAGATCACCAGTGCCTGCTGCAAAGCTTCTTGAATCCAAGGTTATTGACAAAGACCTCTATAACAAGTTACAGAAAGGACAACTGCTGGTCAAAGATGTGTCTGAGATGGAGCATGTGCGAAATGCCTTGAAAGGCACTAACTGCATTGCAGGAGTAATTGTTGACTCAACCAAACAAACAATGTCATTTTATGATGCCATGAAAGGCGACACGATGAGACCTGGCCCTGCTCTTCATCTCTTGGAAGCACAAGCTGCCACAGGATACATCATAGATCCTATTAAAAACCAAAAACTTACAGTAGATGAAGCTGTCAAAGCAGGTGTTGTCGGACCAGAGCTGCATGAAAAACTACTGTCTGCAGAGAGAGCTGTCACAGGTTACAAAGATCCCTTCGCTGGTAAAACAGTGTCCCTATTTGAGGCTATGAAGAAAGATCTGATATTAAAAGACCAGGGAATTAGACTGCTTGATGCACAACTGGCAACTGGAGGCATCATCGATCCTGTCGAAAGTCATCGTGTTCCACATGACGTTGCCTGCATGAGGGGTTGTTTTGATGATGCGACCCAGAAGTTTTTGAGCAGTGCAACTGATGAAGTTAAAGGATACTTTGACCCAAACACTCAGGAATATGTCACTTATCCGCAGCTCTATAAAAGATGTGTCACTGACAAAAAAACTGGCCTTAAGCTTCTGCCTTTGTCCGAGCAAGCCATCAACGCCAGGGAAGAGATGAAATATACTGATGCCCAGACCAAAGACGCAATGACTCAGGCGACTGTTGAGGTTCAGAGTGGACCTTTCAAAGGAAGAAAAGTTACCATATGGGAGCTCATTAACTCGGACTATCTTACAGAGGAGCAAAGACTTGACTTAATAAGACAATACCGATCAGGTAAAATGACTATTGAGAAAATTACAAAGATTTTAATTGTGATTGTCACCGAGAAGGATGCCAAGAAACAAGAAGAGGGCTGCTTTAAGGGACTTAGAGCTCCTGTTCCAGCCAAGTCATTGTTTGACTCCAAAATCATTGACAAGCCAACCTATGATTTGCTAGAACAAGGTAAAAAGACTCCAAAAGAGGTCAGCAAAGACAATTCAGTCAACAAGTATCTCCAAGGCTCAGAGAGCATCGCTGGAGTCTACCTTGAGCCAACAAAGGAGAAAGTTAGCATATACCAAGCAATGAAAAAGAAATTCCTCAGACAGAACACAGGTATTGCGTTACTTGAAGCTCAGGCTGCCACAGGGTTTATCGTGGATCCATCAAGAAATGAATGTCTCTCTGTGGATGATGCAGTTAAAGCAGGCATTGTTGGTCCAGAGCTTCACGAGAAGCTTCTCTCTGCTGAAAAAGCTGTCACTGGATATAAAGACCCATTCACAGGAAATAAGATCTCTCTTTATCAAGCCATGGACAAAGACCTTGTCCTCAAAGAGCATGCAATGCCACTCTTGGAGGCACAGTTGGCAACTGGTGGAATTATTGATCCAGTAAACAGTCATCGACTTCCTGTTGAGACTGCAATCCAGCGTGGATATGTTTCAAAACAGCTAGCCAGCAGCATTGCTGAAAGCAAGTATTTCTCTGACCCTGCATCTGATGAGAACATATCATACAAGCAACTAAAAGACAAGTGTATTACAGAGCCTGATACAGGATTAAATCTACTAAAGCTTTCCAAACCACAGGCCCCAACAGTGGTGGAAAAGACATACCTTTACAGCGAAGAACAAACCCAGAGTGATCTATCAACTACACAAATTGATCTACCAATTGAAGGTCAGGGCTCTATGTCTCTTTGGGATGTGATGAATTCAAATCTACTCCCTGAGGAACAGAGAGCTCAGCTTCTGGAAGAATATCGTTCTGGCAATATAACAAAGGAACGGATGATAATCATTATAATTGAGATTCTGGAGCAGAGAGAAGTAATTAAAGGGGGGAACTTCCAGACTGGTGGCACAAGAAGACGCCAAATCACAATTGAAGATCTCTACAATGCTCGCATCATTGACCTTGAGACCTTCAACATGTTGAAAAAGGAGAAAAAGACTATGCGTGATGTCATGGAGATGCAAAGTGTTAAGCGTTACTTGTACGGAACTGGCAGTGTTGCTGGAGTGGTGACTGATTCAAATTCTAAGATCAGCATTTATCAAGCAATGAAGAGAGAGATTTTGAAGCCAGAGATTGCAATTGGTCTCTTGGAGGCACAGGCAGCCACTGGATTCATTGTTGATCCTGTTAGGAATGAAATGCTTACCGTAGATGAAGCAGTGCGCAAGGGTATAGTGGGCCCAGAATTTCATGATAAACTCCTGTCTGCAGAAAGAGCAGTCACTGGCTACAAGGATCCATATAGTGGAAAGGTTATCTCCCTTTTCCAAGCAATGAAAAAGGGCCTTGTCCCTGAGGATTATGCTCTAAGGTTACTCGAAGCTCAAACAGCAACTGGCGGAATTGTTGATCCAGAGTATAATTTCCATCTGCCAACAGAGATTGCCACACAGCGTGGATACATCAACAAAGAGACCAATGAAAAGCTGTCTGATGAGGTTCAAGGATATGTAGATCCATTAACTGATGAAAAGATGTCATACGCTCAGCTTCTGAAAAGATGCAAAGTTGACAAAGATGGGCTGCATCTGTTGTCACTGGCAGACAGAAGGCTACTCTTCAGAGGTCTCAGAAAAGAAATAACAATAGAAGAGTTGATCCGCTCCAAAATCATTGATGAACAAACAGTCAGTGAGCTGAATGAGGGACGGCTAACAGTGGAGGAAGTGAGCAACAGATTGAGGAAATATCTACAGGGCTCAAGCTGCATTTCTGGTGTGTTTGTAGAGTCTACTAAAGACCGTCTATCTATCTACCAAGCCATGAAAAAGAATATGATCAGGCCAGGTACTGCTTTCGAGTTGCTGGAAGCTCAAGCAGCCACAGGGTATATCATTGACCCGATAAAGAATCTCAAGCTAACGGTAAATGAAGCAGTTAAGATGGGAATTGTTGGCCCGGAGTTCAAAGACAAGCTGCTTTCTGCTGAGAGAGCTGTGACTGGTTATAGAGATCCCTATACAGGCAAAATGATCTCACTCTTCCAGGCTATGAAAAAGGGCCTGATTTTGAGAGATCATGGTATTCGTCTTCTGGAGGCCCAGATTGCCACTGGAGGAATCATAGACCCAGAAGAAAGTCACCGCTTGCCTGTTGAAATGGCCTACAATAGAGGGTTTTTCGATGAGGAGATGAATGAGATCCTCAATGACCCATCGGATGACACCAAGGGCTTCTTTGACCCAAACACAGAGGAGAATCTCACCTACCTGCAGCTGATGGAAAGGTGTATTGTAGACCCAGACACCGGTCTTGTTCTCTTGCTCCTAAAAGAAAAGAAACGTGAGAGAAAGACTTCTTCCAAGTCCTCTGTTCGCAAACGCAGAGTCGTCATTGTAGATCCTGATTCGGGCAAAGAAATGTCTGTTTATGAAGCCTACCGCAAAGGGCTAATTGACCATCAGACCTACCTTGAACTTTCAGAGCAAGAGTGTGAATGGGAAGAGATCACAATGACATCATCCGAAGGGGTCGAAAAGTCTATTCTCATTGACCGAAGATCAGGTCGACAGTATGACATTGATGATGCCATCGCAAAAGGACTAATTGACCAGAGTGCAATTGACCAGTACCGCTCTGGCACCCTTTCCATCACAGAATTTGCCGATATGTTATCTGGAAACATGAGTGGCATCCGATCCCGCTCATCTTCCTTCGGATCCACCTCTTCTTATCCAATGAGCCCCATTCCTAGCATCAAAACTCCAGCATCTATATGGAATGATCCAACTGAGGAGACGGGTCCAGTGGCAGGAATCCTTGACACAGATAGCCTTGAAAAAGTTTCAGTAACTGAAGCCATACGAAGAAATGTAGTGGACTCTATAACTGGCCAAAGACTGTTGGAGGCACAGGCCTGCACTGGTGGCATAATTGACCCGTCTACTGGAGAGAAATTCTCAGTTGCTGAAGCCACAGAGAAGGGCCTTATAGATAAGATAATGGTTGACAGACTCAATCTAGCCCAGAAAGCCTTTCATGGATTTGAGGATCCTCGCACTAAAGTCAAAATGTCTGCAGCTCAGGCTCTCAAGAAAGGCTGGCTTTATTATGAAGCAGGGCAGCGTTTCCTGGAAGTGCAGTACCTCACTGGTGGCCTTATTGAGCCAGAGACTGAGGGAAGAATCTCCCTTGAGGAGGCAATCAGGAAAGGTGCTATTGATGGCCGCACAGCCCAAAAGCTCAGAGATGTAAATGCCTACACTAAATACCTTACATGTCCTAAAACCAAACTGAAGATCTCCTACAAGGATGCCATGGACAGAAGCATGGTTGAAGAAGGATCTGGCATTAGGCTTCTGGAAGCTTCATCAACTTCTAGTAAAGGCCTCTACAGTCCTTACAATGTCAGTGGTGCTGCATCTGCTTCTGGCTCACGGTCTGGGTCCAGGACAGGCTCTCGTTCAGGTTCAAGAAGGGGGAGCTTCGATGCTACTGGCTCTGGATTCAGCATGAACTTCTCATCATCCTCATTTACTTCCTCCAGCTACAGCCGTAGATTTTAAAGCTGGACCTCATAGCTAGCTTACCATGTGGTCCTGCGGCTTTCATATCAATACACTAGAGTTACATAATATACATAAATTAATTAGATTAGAATGACTTTAATCTGTTTTGCATGTGTTTGGTGTAGGAAAATGCATTCCAAAAATTACCAGTATCTTTTTATCTGCCGATGGTCAAGTTCCCATTTTATGTAGTTTGGATGCTTAGGAATTGTTAATTCCCTAGTCAGCTTTAATCATAGTTCAAGTTATCTAGTTTAGGTTTATTTTAGATTAAACTGACTGCATATTTTTGGAAGTGATTTTTTTCTTCTTATTTTGTAAATGTGTCATCTAAATCCCGGAATTGTTAAGCATTTTGAAACTTATTTTTAATCGAGTTCGGTTTAGGCTGTATTTAATATTACATATAGTGAGCCTATATTTCTACATTTTATTTGAGAAAAAAATCTTTTTATACTTTGGTTTATTTCAGGAGAATGTATCAGTAAATATACCAAGTTTTACAAAAAAAGAGAGAAAGAGATTTGATTAATATAGAGTGTGGTTATTTTTACATATTTGTATAGATTTGATAGATGGATATATTAGAGACTTCTAGCCTATTTTGCAAGCAAAAGTTGCAGATAGTTTAACAGAATGTAAAAAAGACACTACATATAAACACTAAAGGAGGAGCAAGCACCTTGTACAACAAACCAAGATCCCTTTAAACTGAAATTATGAAAGTTCATTTACTGGATCCAGTGCCTCTCCAAAGTCCTTTGCAAAACTACTCCAGGCTGCCTTGTAAATGAATCCTCCACTGATGTGTTGTCCAATGAAGATTCCTGATGTCTGATCCATGCCTCTCTCATAACATCATGACAGATGTGGATGAAATGTTAGTACTT
Seq C2 exon
ACATCACCTGATACTAGATTTGATGACGCCACACATTTGGTCTTGGATGACGAGATAAATGATGTTTATCAGCAGCCCACATCTTCAGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021987-'53-52,'53-49,58-52=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=0.115 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.0),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.9),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.8),PF0068115=Plectin=WD(100=1.6),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]