DreEX6039250 @ danRer10
Exon Skipping
Gene
ENSDARG00000021987 | plecb
Description
plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
Coordinates
chr16:5580837-5593982:+
Coord C1 exon
chr16:5580837-5580935
Coord A exon
chr16:5583392-5586745
Coord C2 exon
chr16:5586979-5593982
Length
3354 bp
Sequences
Splice sites
3' ss Seq
ATTTACTTCCACTAATACAGAAA
3' ss Score
4.67
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
TATGTAACTCTGAGAACCCGCTATAGTGAACTGATGACTCTGACCAGTCAGTACATCAAGTTCATCACGGACACGCAGCGCCGCCTGGAGGACGAGGAG
Seq A exon
AAAGCTGCTGAGAAACTAAAAGCTGAAGAGAGGAAAAAAATGGCTGAGATGCAGGCAGAGTTAGACAAACAGAAGCAGCTAGCTGAAGCTCATGCCAAGGCCATTGCCAAAGCGGAGAAAGAGGCACAAGAGCTCAAGCTCATGATGCAGGAGGAGGTTAGCAAGCGAGAGTTTGTTGCAGTGGATGCTGAAAGGCAAAAGCAGAACATCCAGCTGGAGCTACATGAGCTCAAAAACCTCTCTGAGCAACAAATAAAATCAAAGAGTCAGCAAGTGGAAGAGGCTCTGCAAAGTCGTGTCAAAATAGAGGAGGAGATTCGCATCATAAGACTTCAGTTGGAAACTACGATGAAGCAGAAATCCACTGCACAGGAGGAGCTAATGCAGCTTAGAAGCAAAGCTGCTGAGGCGGAGAGACTTCGCAAAGCCGCTCAGGAGGAAGCCGAGAAACTTCGCAAGCAAGTTAATGAGGAGACCCAGAAGAAGCGGATAGCAGAGGAAGAGTTAAAACTGAAGTCTGAAGCAGAGAAAGAGGCTGCCAGGCAGAAGCAAAAAGCTCTGGATGATCTTGATAAGCTCAAGATGGAGGTGGATGAGGCCGAGAGACACATGAAGCAGGCCGAGATTGAGAAAGAGCGACAAATCAAACTCGCTCAAGATGCTGCTCAGAAAAGTGCATCGGCTGAGCTTCAGAGCAAGCGCATGTCCTTTGTCGAAAAGACATCTAAACTAGAAGAGTCACTTAGAGAGAAGCATGGGACTGTCATTCAACTGCAGGAGGAAGCAGAACGCCTCAAAAAGCAGCAGGAGGAGGCAGACAAGGCAAGGGAGGATGCTGAGAAAGAGCTTGAAAAATGGAGACAAAAAGCCAATGAGGCTCTTCGACTAAGGCTCCAGGCAGAGGAAGAAGCCCACAAAAAGACTCTTGCCCAGGAAGATGCGGAAAAACAGAAAGATGAGGCTGAGCGTGAGGCTAAAAAACGGGCCAAAGCTGAAGAGTCTGCCCTGAAACAGAAAGACATGGCTGAGCAAGAGCTTGAGCGGCAGAGGAAGCTGGCAGAAAGCACAGCACAGCAGAAGCTCTCTGCCGAACATGAGCTAATTCGCTTGAGGGCTGATTTTGATCATGCTGAGCAGCAGAGATCTCTGCTTGAAGATGAACTATACCGTCTTAAGAGTGAGGTCAGTGCTGCAGAGCAGCAGCGCAAGCAGCTTGAAGATGAGCTTTCCAAAGTTAGAAGTGAAATGGAAGTGCTTTTGCAGCTTAAGTCTAAAGCTGAAAAAGATAGCATGTCTACCACTGAAAAGAGCAAACAGCTCTTGGAAGCTGAAGCTGGTAAACTGAGGGATCTTGCAGATGAAGCAGCCAAGCTTCGTGCCATTGCTGAAGAGGCAAAAAGGCAGAGGCAGGTGGCTGAGGAGGAAGCTGCACGACAGAGAGCAGAAGCAGAAAGAATTCTCAAGGAGAAACTCGCTGCCATTAATGAAGCTACTCGCTTGAAAACTGAGGCAGAGATAGCCCTTAAAGAAAAGGAGGCCGAAAACGAACGTCTGCGAAGGAAAGCTGATGATGAGGCTTACCAGAGAAAGGCTCTTGAAGATCAGGCAAGCCAGCACAAGCAAGACATTGAGCAAAAGATCAATCAGCTCAAGAAATCCTCCGAAATGGAATTAGACAGGCAGAAAACAATTGTGGATGAAACTCTTAAACAGAAAAGAATAGTTGAAGAGGAGATTCGCATCTTGAAACTTAACTTTGAGAAGGCTTCATCTGGCAAGCTTGATTTGGAGCTTGAACTGAATAAACTGAAGAATATTGCAGATGAAACGCAACAAAGCAAACTGCGAGCAGAAGAAGAAGCTGAGAAACTACGTAAGCTTGCCCTCGAGGAGGAAAACAAAAGAAGGGAGGCTGAAGAAAAACTGAAAAAAATTACTGCTGCAGAACAGGAGGCAGCTCGACAGCGCCAAGCTGCCCAAGACGAAGTAGAGCGCCTCAAGAAGAAAGCTGATGAGGCTAGAAAGCAAAAAGAAGATGCTGATAAAGAAGCGGAGAGGCAAATATATGCTGCCAAAGAGGCTGCAGAGAAAGCAATTACAGCTGAACAGCAAGTCCAGAGTGTTCTTGTTCAGCAGAAGGAGGACAGCCTGGTACAGAAAAAGCTCAAAGAGGAGTTTGAGAAAGCCAAAAGGCTTGCCCAAGAGGCAGAAAAAGCCAAAGAAAAAGCAGAGAAAGAGGCTGCCCTCCTCCGTCAACAAGCAGAAGATGCAGAGCGTCAGCGCCAGACTGCTGAAGTTGAGGCAACAAACCAGGCTAAAGCCCAAGAGGAGGCAGAGAGACTCCGAAAGGACGCAGAGCTAGAGGCAGAAAAGCGAGCCCAAGCTGAGGCAGCAGCACTGAAACAAAAACAGATTGCTGATGAAGAAATGGCTAGGCACAAGAAGCATGCAGAGCAGACACTTAAGCAGAAGTCTCAGGTGGAGCAAGAGCTTGCTAAAGTTAAACTGCGGTTAGATGAGACTGATAAACAGAAGAGTGTTCTAGATGAAGAGCTTCATCGACTGAAGGATGAGGTCGGTGACGCTGTTAAACAGAAAGCCCAGGTAGAGGAGGAACTATTCAAAGTCAGGATTCAAATGGAGGAGCTCATCAAGCTCAAGCTCAGAATTGAGCAAGAGAATCAGCGTCTCATCCAGAAGGACAAAGATAATACTCAAAAATTCTTGGCCGAGGAGGCTGAGAACATGAAAAAGCTGGCTGAGGAGGCTGCCAGGCTAAGCATTGAGGCCCAGGAGACTGCTCGAATGAGACACATCGCAGAGACTGACCTTGCTGAGCAAAGAGCTCTTGCTGAAAAGATGCTTAAAGAAAAGATGCAAGCCATTCAGGAGGCGTCTAAGCTTAGAGCAGAGGCAGAAATGTTACAGAGACAGAAGGACCTTGCTCAAGAGCAAGCTCAAAGGCTACTTGAAGACAAACAACTGATGCAACAACGGCTCAAGGAGGAAACTGAAGGCTTCCAAAAATCATTGGAGGCTGAACGCCGAAGACAGTTGGATATAGCAGCTGAGGCAGAGAGACTTAGACTTCAGGTGTCCCAGCTCAGTGATGCACAGTCTAGAGCTGAGGATGAAGCCAAGAGGTTCAAGAAGCAGGCAGATGATATTAGTGCACGGCTGCATGAGACAGAGCTTTCCACCAAAGAGAGAATGACAGTTGTTGAAAAATTGGAAATACAAAGACTGAGCAGTACCAGAGAAGCTGATGACTTACGCAAAGCCATAGCTGATCTTGAAAACGAGAAGGCAAAATTGAAAAAAGATGCCGAAGATTTACAGAAAAAGTCTAAAGAG
Seq C2 exon
ATGGTGAATGCTCAGCAAGAACAAATTAAACAGGAGAAAACAATCCTCCAGCAGACATTTATGTCGGAAAAAGAGATGCTGTTGAAGAAGGAAAAACAAATAGAAGATGAAAAGAAGAGGTTAGAGAGTCAATTTGAAGAGGAGGTCAGAAAATCAAAAGCCCTAAAAGATGAGCAAGAACGCCAAAGAAAACAAATGGAGGATGAAAAGATAAAACTCAAGGCCTCTATGGATGCTGCTCTGATAAAACAAAAAGAGGCTGAAAAAGAGATGTTCAACAAACAAAAGGAGATGCAGGAGCTTGAAAGGAAAAAGCTTGAACAAGAAAGGATGCTTGCTGAGGAAAACCAACAACTGCGTGAGAAACTTCAGCAGCTTGAGGTTGCTCAAAAAATCACCCAGGAGATTCATATCCAGACTGATTGCAAGAAAGTCCTCAATGGTCAAAGTATTGAGGTTGACGGCACACAGGGTTATCCTGGATTATCTTTTGATGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021987-'49-49,'49-48,53-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.687 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.0),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.9),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.8),PF0068115=Plectin=WD(100=1.6),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2)
Main Skipping Isoform:
ENSDART00000160008fB4719
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]