HsaEX1030623 @ hg38
Exon Skipping
Gene
ENSG00000107263 | RAPGEF1
Description
Rap guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr9:131598199-131602149:-
Coord C1 exon
chr9:131602061-131602149
Coord A exon
chr9:131598421-131598543
Coord C2 exon
chr9:131598199-131598310
Length
123 bp
Sequences
Splice sites
3' ss Seq
GAACCTTTTTATTTTCCCAGCGG
3' ss Score
6.52
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
GAGCCACCGGCTGGGAAAGACGGACATCCCAGAGATCCCTCAGCGGTCAGCGGCGTCCCTGGGAAGGACAGCAGAGACGGCAGTGAGAG
Seq A exon
CGGAATCACTTCCGTGTACAGATGGAACATCCAGAGGCAGCAGCGACTGTCCTATGGCCACACAGCCAGTCAGTAGCAGAGCTGAGGATCCAGTCCATAGTGACGTAGCTGCCATCGGGGCAG
Seq C2 exon
GGCCCCAAAGTCACCAGATGCTCTGGAGTCGGCTCAGTCGGAGGAGGAAGTGGACGAGCTGTCCCTCATTGACCACAACGAAATTATGTCCAGGCTGACGCTCAAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107263_MULTIEX2-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.640 C2=0.772
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000372189fB24104
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGGCTGGGAAAGAC
R:
CTCCTGCTTGAGCGTCAGC
Band lengths:
198-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains