HsaEX1030699 @ hg38
Exon Skipping
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr1:178299992-178390206:+
Coord C1 exon
chr1:178299992-178300118
Coord A exon
chr1:178372203-178372322
Coord C2 exon
chr1:178390100-178390206
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTCTCACTTCATCATTCAGTAA
3' ss Score
6.35
5' ss Seq
TGGGTACGG
5' ss Score
6.54
Exon sequences
Seq C1 exon
ATACCTGTGGAAGGGGGACAGGAGCAGCAGACAGATTCCACCAAAGGGCGATGCCTGAGGAGAACTGTCAGTGTCCCTTCCGAGGGTCAGTTTCCCGAGTACCCACCAGAGGGCGCCACTAAACTGG
Seq A exon
TAATTGTGCTCTGTATGGAAAAGTTTTCTGGCTGGAGAATGAGTCTCCTTTCCCCCGGTGATGTGGCGGAGTGGTTGGATAGTAGCACCGAAGAAGAGAAGAGCCTTCTGTCATTTCTGG
Seq C2 exon
AGGTACCAGCAGAAAGGTCCCCTCGTAGACGGAGTATCTCAGGGACCAGTACATCAGAGAAACCCAACTCCATGGACACTGCAAATACCTCACCCTTCAAAGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391_MULTIEX3-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.890 A=0.220 C2=0.861
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(18.0=100)
A:
PF0016924=PH=FE(14.7=100)
C2:
PF0016924=PH=FE(15.0=100)
Main Inclusion Isoform:
ENST00000367649fB24154
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAAGGGGGACAGGAG
R:
TGGTACTTTGAAGGGTGAGGT
Band lengths:
230-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains