HsaEX1031285 @ hg38
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151483199-151506375:+
Coord C1 exon
chr2:151483199-151483335
Coord A exon
chr2:151499405-151499540
Coord C2 exon
chr2:151506210-151506375
Length
136 bp
Sequences
Splice sites
3' ss Seq
CAACACCTGTATGACACAAGAAA
3' ss Score
-3.59
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
TTTCTTGAAGATGGCTCTTTGCAGCCTACGTGGTAGTGGAGATATATACAAAGGACTTCCCTAGTATCGTTGGACCAACAAGCACAAGCAGATGGCAGGAAGATTAGAACATTGGATATTGATTGCCAGTTTTTAAG
Seq A exon
AAAGCATCCAGAAAAAACAAGAGCAGTCAAAACAGCCCTTTCATCTACCTTGTGGGGAACCTGGTATAAAACTACAGACGTCAGACAGAAAAGACAGATTCAACAAGTCAACCTCTCTGTTCAGGCACAGATCTGG
Seq C2 exon
GTGTCTTTCCGATAGCCGTTCCTGGTGAGACATCCTCTTTATATAAAACCTGGGCATTCAGAATCAGGACAGTGTTAACACAGAAGAAAAGAAAACCCAGCAGTTCCTGGAGAAAGACTAGGACACATGGCTTTTGTGAAAACAAGACACTAGACGATGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345_MULTIEX5-4/5=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTACGTGGTAGTGGAGA
R:
GCCATGTGTCCTAGTCTTTCTCC
Band lengths:
247-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains