HsaEX1031683 @ hg38
Exon Skipping
Gene
ENSG00000229931 | RP1-151F17.1
Description
NA
Coordinates
chr6:16761138-16762652:+
Coord C1 exon
chr6:16761138-16761166
Coord A exon
chr6:16762119-16762279
Coord C2 exon
chr6:16762352-16762652
Length
161 bp
Sequences
Splice sites
3' ss Seq
CGACGTGTCCTTGGTCCCAGGCG
3' ss Score
7.28
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTTTCCGTGCAGCCGATTGGGGTTTTGG
Seq A exon
GCGCTCGGAGCAGCATCTGAGAGGGCTCACTCTGATCATCAGCTGCACGTTAAGCCACAAACCGGCGTCGCTTCGGCGTTCCGGAACCCAGGCCTGGGGGCCGCGGGGATTGCCTCTGCGTGCAACTCCGGAAAGTTTCAAGGGGTCCCCCGACTGCACAG
Seq C2 exon
GTCCGGAAATCGGCTTTGATATGGAACTACTCCGCTCTAGCCTGGAAAGGAGACCCGCGCACTCCTCTCGCAGCTAATTTCGGATCATTAATTTAATCGGAAATGAGGTAACCAGTGTAGGAGACAGAGAAAGCAACCGGAGCATCAAATGGCAGTTCTCGAGAATCGACGAGGAACTTAAATCTGGACTCAGGGTTTCAGTGCGGTCTCCGACTCCCACCACCCCGCCCCTCCGCCTGTCTCGCCGCCAGGTGTGACCTCCACGCGAAGGAATCTTCTTCGGATGGGTGCACCTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229931_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCGTGCAGCCGATTG
R:
GGGTGGTGGGAGTCGGAG
Band lengths:
254-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains