HsaINT1029662 @ hg38
Intron Retention
Gene
ENSG00000229931 | RP1-151F17.1
Description
NA
Coordinates
chr6:16762119-16762652:+
Coord C1 exon
chr6:16762119-16762279
Coord A exon
chr6:16762280-16762351
Coord C2 exon
chr6:16762352-16762652
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTTTCTCTCTTCGCACGCAGGTC
3' ss Score
11.49
Exon sequences
Seq C1 exon
GCGCTCGGAGCAGCATCTGAGAGGGCTCACTCTGATCATCAGCTGCACGTTAAGCCACAAACCGGCGTCGCTTCGGCGTTCCGGAACCCAGGCCTGGGGGCCGCGGGGATTGCCTCTGCGTGCAACTCCGGAAAGTTTCAAGGGGTCCCCCGACTGCACAG
Seq A exon
GTACCCTCACCTTTCCTGCCGGCGAACGCTGGCGACCGCCCGACCCTGCCCTCTTTCTCTCTTCGCACGCAG
Seq C2 exon
GTCCGGAAATCGGCTTTGATATGGAACTACTCCGCTCTAGCCTGGAAAGGAGACCCGCGCACTCCTCTCGCAGCTAATTTCGGATCATTAATTTAATCGGAAATGAGGTAACCAGTGTAGGAGACAGAGAAAGCAACCGGAGCATCAAATGGCAGTTCTCGAGAATCGACGAGGAACTTAAATCTGGACTCAGGGTTTCAGTGCGGTCTCCGACTCCCACCACCCCGCCCCTCCGCCTGTCTCGCCGCCAGGTGTGACCTCCACGCGAAGGAATCTTCTTCGGATGGGTGCACCTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229931:ENST00000423260:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAAGTTTCAAGGGGTCCC
R:
ATGCTCCGGTTGCTTTCTCTG
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains