HsaEX1031708 @ hg38
Exon Skipping
Gene
ENSG00000231150 | RP1-207H1.3
Description
NA
Coordinates
chr6:38924913-38932926:-
Coord C1 exon
chr6:38932877-38932926
Coord A exon
chr6:38931297-38931373
Coord C2 exon
chr6:38924913-38925051
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTGAATTTCATAGGTA
3' ss Score
9.19
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACCAGCCACCTTTCAAGGGCCTGTGCCTGTGGTAACTGTCTATGAGCCAG
Seq A exon
GTATATCTGAAGCATATTTGACAACAGAAAAAGTTAATGTAATTTTCAAAGGAAAAACGCCAACTTTTTTCAAAAAG
Seq C2 exon
GAAACAGCAACTGGAGAGCAGATTTGCAAACCAGAAAAGCAACTCATGAATACAAATTGCCTGGAAAGCATTTATTACAACAGAAGCTCTGCAAGATATACCGGAAATTGACAGTGGCATCGAATTCCCAGCAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231150_MULTIEX1-3/6=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCCTGTGGTAACTGTC
R:
TCCTTGCTGGGAATTCGATGC
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains