HsaEX1031710 @ hg38
Exon Skipping
Gene
ENSG00000231150 | RP1-207H1.3
Description
NA
Coordinates
chr6:38923029-38932926:-
Coord C1 exon
chr6:38932877-38932926
Coord A exon
chr6:38924913-38925051
Coord C2 exon
chr6:38923029-38923567
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATAGCTTGGCATCCCCTAAGGAA
3' ss Score
1.9
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ACCAGCCACCTTTCAAGGGCCTGTGCCTGTGGTAACTGTCTATGAGCCAG
Seq A exon
GAAACAGCAACTGGAGAGCAGATTTGCAAACCAGAAAAGCAACTCATGAATACAAATTGCCTGGAAAGCATTTATTACAACAGAAGCTCTGCAAGATATACCGGAAATTGACAGTGGCATCGAATTCCCAGCAAGGAAG
Seq C2 exon
TTTTCTAAGGACACCAACAGACACCAGCAGAAGACAGCCTTGCATTTACAACAAACCATTGATCCACAACAAACCATTGATCCACACTTTCAAAATCATTGAGGTGAAGCATAGAGAACTGGAGTGGAGACGGCTCTGGCAAATCCAAACAATATCAAAAGCACTCTCATACTGAAAACCCACAGTGCTGAACCACAGCTGAGATGTAAAATATTTCACAAAATCTTCTTCACCCTCTATAGTATTTCACCTGAGAGTGCATGATTTAAGTTGCAAGCACTGTCATAGATGATGGGATTCAGAGATGAACACATGGAAATGGACTTTATGTTCTCTAATGTCACAAAGAAAGAGTGATTATGAAGAAGACCCAGATTCCCACCTATTAATCTGAGCTTTGAATTCTTTACTTTGCTGGGTCCACCGGATTTTTTCTCCACTCAGCCCATCGATGAGAGTGGAGGCGGCCTGCATCTTTTTCCGGCACGTATCAGCGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231150_MULTIEX1-5/6=2-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCCTGTGGTAACTGTC
R:
TTTTACATCTCAGCTGTGGTTCA
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains