HsaEX1032295 @ hg38
Exon Skipping
Gene
ENSG00000227373 | RP11-160H22.5
Description
NA
Coordinates
chr1:174155627-174160004:-
Coord C1 exon
chr1:174159917-174160004
Coord A exon
chr1:174158887-174158990
Coord C2 exon
chr1:174155627-174155697
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGCGCCTGTTTGAAGGTG
3' ss Score
7.98
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GTAGCAGCGGGCGGCAGCCGCCGAGGCAGCAATGTCAGGAGGGCACAGCTGGAGGAGGCGGCCGCCAAAGCCACTACCCCACCCCCAG
Seq A exon
GTGTCTGTGTGCTTGTGAAGCGCTCCCTTGTTAGTTCCTTCTGTGAGACTCGGGGGAGACTGAAGAGGGAAATCACCTGCGGGGAATGAACAGGAAAGCAATAA
Seq C2 exon
GAAGATTTGGAAAAGAGGCACTGGCTACTGGAGGAAGGGAGAAATCACCGAGAGAGCGAAAGATGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227373_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCAGCAATGTCAGGAG
R:
CTGTTACATCTTTCGCTCTCTCGG
Band lengths:
138-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains