HsaINT1031201 @ hg38
Intron Retention
Gene
ENSG00000227373 | RP11-160H22.5
Description
NA
Coordinates
chr1:174158887-174159287:-
Coord C1 exon
chr1:174159164-174159287
Coord A exon
chr1:174158991-174159163
Coord C2 exon
chr1:174158887-174158990
Length
173 bp
Sequences
Splice sites
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
3' ss Seq
TCTTCTGCGCCTGTTTGAAGGTG
3' ss Score
7.98
Exon sequences
Seq C1 exon
CTGACAGAACCAGAGCTGTTAGAGCAGGGACGCGCGAAAGGCGGGAGTACGGGCGGCGCTGGAGAACCTCCGCGGCGGAGGGGCCTGGGGGTGGGACCGCGCCCGCGAGCCCGCCCTGACCGGG
Seq A exon
GTGCGTTCTACTGGCAGTTGCTGAGTTCGGAAGATTAACTCTGAATGTGGAGAGATTATTTTCTTGCTCGTAAACCTGGTTTACATATTTTCATTCTTAATGCTCAGTAATCTTAAGGAAAGTCACCTGAAAGAATACTTTTTCACCAAGTACTCTTCTGCGCCTGTTTGAAG
Seq C2 exon
GTGTCTGTGTGCTTGTGAAGCGCTCCCTTGTTAGTTCCTTCTGTGAGACTCGGGGGAGACTGAAGAGGGAAATCACCTGCGGGGAATGAACAGGAAAGCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227373:ENST00000430592:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAGAACCAGAGCTGTTAGA
R:
ATTGCTTTCCTGTTCATTCCCCG
Band lengths:
226-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains