HsaEX1032757 @ hg38
Exon Skipping
Gene
ENSG00000245648 | RP11-277P12.20
Description
NA
Coordinates
chr12:10363769-10374136:+
Coord C1 exon
chr12:10363769-10364033
Coord A exon
chr12:10370379-10370452
Coord C2 exon
chr12:10374035-10374136
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTGATTTTCTGCTCCTACAGGCT
3' ss Score
9.07
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTCAATCCCTTGGTCTCTCTGATTCCTTATATATCCCGATACATTTCTGGGGGCTCATCAGGATTGGAGATGACAGATTTACTGTCCCCTTTGCCTGCGATACTAGGTCCCCGGGGCCAGGAGAGACCCGGCATCCAAGGTGTGCCACAGCTGAGCTTCACCCGGATATATAGACCAGCTCTCCCCACGTCCCAGCACCCTGCCTGGCAGCGCAATGGAACCGAGGATGGGGCTGCAGGACGATACCAGCACTTCAGGAACTGTG
Seq A exon
GCTGGCAACCTTGTAGTAAATGGGACCACATCCCTTAAACTACCCAGGAGCAAAGCTGGACTTCCACGAAAAAG
Seq C2 exon
ACAGAATCTTGCTCCGCTGCCAAGGCTGGAGTGCACTGGTTCAATCTCGGCTCACTGCAAACTCTGCCTCCCAAGTTCAAGTGATTCTCCTGTGTCAGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245648_MULTIEX1-2/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGCTTCACCCGGATAT
R:
TGCAGTGAGCCGAGATTGAAC
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains