HsaINT1032552 @ hg38
Intron Retention
Gene
ENSG00000245648 | RP11-277P12.20
Description
NA
Coordinates
chr12:10363769-10374136:+
Coord C1 exon
chr12:10363769-10364033
Coord A exon
chr12:10364034-10374034
Coord C2 exon
chr12:10374035-10374136
Length
10001 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TGTTGTTTGTTTGTTTTTAGACA
3' ss Score
9.17
Exon sequences
Seq C1 exon
CTCAATCCCTTGGTCTCTCTGATTCCTTATATATCCCGATACATTTCTGGGGGCTCATCAGGATTGGAGATGACAGATTTACTGTCCCCTTTGCCTGCGATACTAGGTCCCCGGGGCCAGGAGAGACCCGGCATCCAAGGTGTGCCACAGCTGAGCTTCACCCGGATATATAGACCAGCTCTCCCCACGTCCCAGCACCCTGCCTGGCAGCGCAATGGAACCGAGGATGGGGCTGCAGGACGATACCAGCACTTCAGGAACTGTG
Seq A exon
GTAAGGAGTATAGGCCCAAGGCAGGAAAGCCCGTCCCATAGGGACAAAGGGGAGCTTGATCACCTCCCAGGGACTGACCACTAATCCAACCCAGAGTGGCTGGGGGCAGCAGGAGTGGCCTGCCAATTTGGATGAAGCTTATGTCCCCACTAACAAAGTGAAAGTGGTTCACTGGATCTGGAGACAGGAACTGGGAGTGGTGTGTGTATGTGTGTGAATATGGGAGCCTAACTAGGCTCACCCAGGTCATGAGAGAGGCTCATTCCATCCGATGAGGACTCCTGCAGTAGGAGTGGTGTATGTGTGTGAAAGTGGGAGCCTAACTAGACTCACCCGGGACATGAGAGAGGCTCATTTCGTCCAATGAGGAATCCTGGGGCAAGGAAGGTGTGTGAAAGTGTGTGAAAGCGATGGTCTCGGGAGAGGCCAATGCAGGGAGTGACGTGGGGAGGCACAGATCCCTTAGCACGGGCTGTGTGCTCTGAGGCGAGTGTGGGGGGAAATCAGACCTAGGACATTGCATACAGCTGATAGGACGAGCTTTGCAGCTGTAGCAGGCTGTGACAGGGGAAGACACCTTCCTGGCTAAGCAGTGTCCGAAACTCCTGTAATAGGACCGGGTCTGCTGGACCTGAGAGTGAAAGTGAGAGTGAGAGTGAGAGTGTGCCGCAAGGGAGGAAATGGGAGGGAAAGCGTCAAAACCAACTCCTTTGGAGTGCATGATAAAAATTTTAAAGAAAGGATTTAGAGGTGATTGTGGGATGAAACTGGATGTTCAAAAGTTAAAGACATACTGTGAATTACAATAGCCCTCTTTTAGTGTCAGATGGCTGGCCGAAGGCACTGTAGAGAAATTGGCCGTGTGTTTTAAGGTGGTGACTAGGGTCGGAGGACAGCCAGGGCATTCAGACCTAGTCTTTATATTGACTCATGGCTAAATGTACGCAGCCCTGCCTAGCAGTTTATTGTAGAATGCTCGCAGCTCACGCCGAGATAAACCAACTGTGCTGGCAGCTACGGAGTTAAAGGGAAAGTCACAGAGGCTTCTAGCACCACCGATCCAAAAGTGAAAGTGAAAGTCAGCTGCCCTGGAAGCTATGCAGACCAAAAAAAAAAAAGAGTCTCAGGAAAGAGAAAACCAGTTTTGCAAGAATCACAGGATGGAATAGAGATCCTTCCTACCTATATTCCAATCTATCCCCCCTTACCAAGGCTAATTGCCCCTAAGGAGGTAAGTTCAAACAGATACATGCTCCCACTCTCACCTGAGAAGGAGAAATCGGAGCTCCAGGAAGTTAAAACGAAAGGCTCAAAAAGGTAGGCAGGCCGTCTCAGGTCAAGTCATGCCCAAGTTATGCTTCTGCCTCTTAAGAGGACAAGCAGACCCCCACTAGGACCCAGACGATGCAGTCCAGCTTCAGCACCTACAAAAGTGCCGAGAAGCACTTTTACAAAGGCTAAAGGATGTTAAAAGGAAAAGGCAACCAATATAAAAAAATCTCAGAAGTGCTCCATGGTGCAGATAAAAGCACCAGCCAGTTTTATAGGCATTTTGCTTGTACACTCTGTTTAACCCCGAGGCTGCTGAAAATCAGTGAATAGTAAATACGGCATTTGTAAGGCAGGCCCAAGGAGATATCAGGCATAAATTGCAGAAGTTAGAAGCTCCGTAGGTGTGAATGCTACTCAGCTTATTAAAGTGGCTACCAAGGTGTACATTAACTGAGACCAGGAGGCAAAGAAGAAAGCTGATTGGAGGCTTAATAAAGGCTTATTTACAAGCAGCAGCCCTTATGGGAAGAGAGGCTGGCTTTGCAAGGAGGCATAGATGCGGGTGTGAATGCAGTTGTGGAAAAGGCTAGTCTGGACAGCAATTTGAAAGCCAGCCAAGGCTAGAGAGAGATTAATGTACATGGTGCAAAAGAAAAGGACACTAGAAGGATAAATGTCAAAAGAATAAGGAGAATGGTCAAGGCCATGGTATGAAAAAACCACTGGCCAAGGGCTACTGCACCCAGGAGAAACCCAAGACTGCTGTGAAAGGCAGGATATAAAGGGTCAGAAAAAAGCTCAGATCTGCTCGAAAAGTGTCCAGTACTTAAGCTTTTACATAAGCCAAGAGGAAAGATGGCTTAGTAGTGAACAAAAGCAGGCTGTTTGTGCACTTCCTACTCCAACCACCTGGCGTCGAATAACAGAGTTCCTAAGGGCAGCAAAGTTCTTCCGCATTTAGATCCCAAATTTCTTGCTTGTGGCTAAGCCATTATACAAAGCCACAAAGAGGAGGAAAGAAGGACTCCTCCTCTAGGAGGCCAACCAGAAGAAGGCTTTTCAAAAAATCAAAGAAGCCTTGACTCAGATCCCAGCTTTAGGACTGCCAGATCTAACTAACTAAGCTTATCTTCTTGAATGTCCACAAGTGAAAGGGAGGCCATAAAGATTCTAACTCAAGCCATAAGGTCATGGCATTGCCCAGTGACACACTTATCCAGGCAGTTAGATTCTGTGGCACTTGGATGGCCTCCTTGTTTTAAAGCACTAGCTGCTACTGCCCTACTGGCACAAGAAGCTAATAAACTGACTTTAGAGATGGTGAATACCCTAAACCCGGCTACCTTGCTCCTCATCGAGTCAGTGCCAGGAGACCCCCTTCGTTGCTGTGTAAATGTGATAGATGAAGTGTTCTTAAGCCAGAGAGATTTGACAGATACATCCCTCAGGGACCTGGACATTGAATATTTTACTAATGGAAGCAGTTTCATACTAAACGGAGTCCGCCAAGCTGGGTATGCAGTGGTGACTTTGGATTCAGTAGTAGAGGTGCAGTCTTTGCCTACAAAAACTTCTGCTTAGAAAGCAGAACTAATAGCTCTGACAAGAGCTCTCTGGCTAGCCAAAGACCAAAAGACAAATATTTACACATATTCCAGATATGTTTCTGCCACTTTGCATGTTCATGAGACTATTTACAAAGAAAAAATAATTTTAACTGCTGAAAGTAAAGAAATAAAGTATAAGGAAGAAATTCTAGAGCTCTTAAATGCTGTATAGGCCCCAAAAGGTGGCAGTGATGTACTGCAAGGGGCACCAAAAAGGAAGAATACTAAAGGCTAAAAAAATAAAATAAAATAAGAAAACAGACAAAGAGGCAAAGCAGGCTGCAATGACAACTCCACCTTTTAAAGAGGAAGCCTTAGCTATGCCTCTCCTCCCAGAGATTCCTCTCCTGGATATCCCAAGCTACACTCCAAATGAAAGGGCTTATTTTGCCCAGAAAAATAAAAACTACATTAAAAGGAGATGGTAAATATTATCCAATGGGAGGCTAGCCATACCTGAAATGGTGGCCCCCAGATTTTTAAAAGAGTTCCACCAAGGAACTCACATGGAAAAAAATACAACAACAGAAATGAGGAATGCTATATATCAAAATAGATTGGCTTTAGATTACCTCTTAGCCTCAGGAGGAGGAGTATGTGGAAAATTTAATTTAACCAACTGTTGCCTAGAAATCGATGATAATGGTTGAGCTGTCATGGAAATCACCGCTAGAATGCACACATTGGCCCATATTCCAGTTCAGACTTGGTCTGGGTGGTCCCCGGATTCCTTGTTTGGAGGATGGTTCTCAGCCTTTAGAGGATTCAAAAGCCTCATTGGTGGGTTCTTGGTTATTCTTGGCATCTGCCTCATCCTCCCTTGCCTTTTACCCCTGTTTATTAGAAGTATTCAGTCAACTATGGAGGCAATAGTGGCCTGATACACTACCATGCAGATGATGGCATTAACCAGATATCAGTCGCTGCTGGTAGAAGCAGCAGCTCAGCTCCACGAAGACGTGGCAAATAGTGGTGCTTTCTGTTAACACATTTGTTATAAAAAGCACCAAAGGGGGGAATGGAACAGGAATTAAAAGAAATTAAAGAATGTGTAAGCAAAAACTCAGTTGTATGTAAGAAAACCCAATTCCCCCTGAGGAAGAGAAAGAACTGGAGTCCTTTAAAAATTAACTGCCTGTTTTTCCGTGGCTAGTGAGCCTTATCTCTCCCTTTCCCAGGCATTGTGAAGACCCTGTTTCTCTAGCTGTGCAGCTGCAAGGTCACTAGACAGACAAACTCAAGTCATAAAACATGCTTTTCCTTGAAAAGTAAGAAACAATGTAATGTATGTCTCAATTGAATAACTGTCTTTGTTTCTTGCTTCTGTAATATGCTTCCCCCTGCACAAATCTTCCCCCACAGACAAAATACTTAAAAGATAACTTGACTCTTTGTTCAGGGCTCAGTCATTTGGATGTTAATCCAACTGGGCCAGTGCACCTAAATAATAAAAATCCTCCTCAACCCCTTGGTGTTCCTGATTCCTTATCAATCCTGCTACAGGTGGAGAAAAAAGAAAGACCAGCAGAAAAGAAAAAAACTAGGAGAGGAAGTCAGAGGGAAAGAAAGCAAAAACAGCAAGCATAGAGCCAAACAGCCAGGCAGGCACGCCAAGGGGTAAGTCCCTCTCCCCAAAGAGCTTGGGGACTGGTGCCGGGAGGAGAGCAGAGGAGGTGAAAGGGCATAATTCTTGCAATTTGCGGCAGGCATCTGCCAATCCTCTGGGCCGGTGACTGCCTGGGGCCCAGACTACAGCCGGGCAAATCCCACCCACCCAGCCAGAGAAACTAAGTGTAAAAAGAAAGGAAAAAATATAAAAAGGGAAATCAGGAAAAATAAAAAACACAGGAGAAACAGACAGCTGCGTGTGCGTGGGGGTGGGGCCCGTGCCATGGCCCAGCAGGGCTCGCAGCAGGAGCAGGAGAACTTGGGAAAAGAAAGGGAAACAGGATGAGAGAGAGAGAGAGAGAGAGAGAGGAAAATAGAGCGCAAATGAGAGAGAGAGAGAAATAGAGGGAAAGAGTAAGTAAGAGAGAAACTGGAAGAGACAGAAATCAAAGGAAGATACAGAGAGTGAAACTAGAAAAATAGTGAAAAAGGAAGGCAGAAAGTTAAGACATGCTGAAGATTGTCTGTGAAAGTCATAAGAAAAGCTATAAAAGGGAATTTATGCAAAAAATATTGTATAACTGAAAAACAGGCCTCCTGAATGTAAAATTATTAAAAAAAGTTTATGTACAAGGTATGTAAAAAAATACTTTTAATAACAGGATTATAAAGAGGCATAAGAATACAGATTTTTACCTACATTAAAGGCTAAACTTTTTTTCTGTTTTAAAGATTTAAGCAAGTTTTAAAATGTTAATTGTAAAGGAAATTCTGTGTGTTAACATATTGGCTAAAGTTAAAGGGGTATCATCCAGTTTTTCTGTGAACTGGATATTACAATAAAATCACTATAGATTTTTCTTAAAGCACTAACCTGCTCTTTAACAAAAATTATAAAAAGTTAAAGAATCTATAAAAGTCTTACCTTATAGTTAGACATTAAAATTGGATAAATAATGTCTACAAGATTTTATTAAAATTAAGTTGAACATCAATAGCACATTAATATAATGGTAAAATTTAACTTATCTGGTATAAAATCATACAAAAACATTGTCAAATATAAAATGGTGTTTGGCTTTCTTAAGGCCTAAAGGCAACCCGGTAAGTCACAAGGACCCTCATCCCCAAGGCCACAGAGTGCAGGGTGGTGAAGGCCATAAGAAGGCCAAACATTAAGAGGGGGCAGGGCCACAGTGTCTCCTGGGCAGCGCTGAGCAGGAATAGAGCAAGGGGCATAACCATGAGGCCTCAAGCCCCAGGATATGCAGCAGAAATTATATACTTAATCTATCTTCCACTTTCCCTTCCCTTGGAGCTAAAAGTCTTTTAGCACAGGTAGCACCCCTAGAATTTCCAGTACACCAGCACCAGCCTGAAAACCACATCCTTATCAAAAGATAGAAAGAAAAAAAAACTCAAGCCAGCCTGGGAAGAACCCTATTTTATGCTATTAACCACTGAGACTGCCGTCCGCACAGCCAAGAAAAAAATGGTCCCACCATACTCGAGTCAAGAAAACATCTTCCTCTCAGAATCATGGGTTACTGTACTAGGATTAAGCCCTACTAAGTTAAAGTTAAAGAAAGCTTAATTTTCATATACCTTCTATATCGCTTCCTTTCCTTTCCGTATTTTGTTACTAGCTCCGTTGTTATTAATGTAACTAAGTCTGACTCACCTCAGACCATTGCCTTTAACTCTTGCTCTGTCATACCTTGTGGAAATGTAAAATATCAACAACAGCTAGCCTTTTCACACAAATATTTATGTCCCAGCCCTCTAACTGACACAGGTACCCCTAGCAGTCATTGTTGTAATGACCTGCAGCCAAGATGCTGATTTTCTGCTCCTACAGGCTGGCAACCTTGTAGTAAATGGGACCACATCCCTTAAACTACCCAGGAGCAAAGCTGGACTTCCACGAAAAAGGTTTGTGCAAATCTAAAACCCCTCATCTATTTCACTAAAAGGACTACCCCTTCTCACTGTCAGCCTTATCAGTGTAACCCTGTCCTTCTCTTTATCACCACCTCCACCTTAACTAACTCTAGACCTGCCCTTAGTCGCTTCTGTGGTATGGGGATTGACATAAATGGAAAAGACCCCCTAGGTATTTTTAAAATATGGATTTTTCCCCCATCTCCCCCTTCTTCAGTAGCCTCAGTTCTAGATCCCACACCAGTTGCTCCTACATCTAATAAAACTAGGGTGTCTATTGTAAAAATAAGATATCTAAGACAGACCTTAGCCATCAAGACAAAATATCAAGATGCAAATTCCTGGCTGAAATGGATTAAATAATCCATTCACACTTTAAATAAAAGCGATTATTACGCTTGTACACACGGTAGGCCAGAGGCCCAGATTATCTCCTTTCCACTTGGATGGTCTCCTTGTCATCCAGATATGGAGTGTATGGTGGTTCTTTTTCAAAATCCCACTGCTTGGGATAATCCATCATACTGAGCGCTCTCTGCTATTTCCTGAAATTCAACACCCTGCGGGTCAGCCTCCGAGGGCAATCCAGCTTCCACCTCTAAATGCCAAGTTTACTTTGTGCCTCTCATGGCAGGAGGAAAATTTGGCGTTCCTTGAAAGCATAAAAGGATACAAGAAGCCCAAGCCTTTCCAAGAACTTGCCCATCAGTCCATGCTTAGCCATCCCCAAGCAAATGTATAGTGGTACTGTGGAAGACCTTTACTGGACACTCGGCCAAATAACTGGAGCAGTACTTGTGCTCTAATCCAATTGGCTATCCGCTTCACGCTGGCATTTCGTCAATCTAAAAAGGTAAAAACAAAACACCGCAGGCCAAAGGAAACTCCTTGAGTCCTTTAATCCTCAGGTTTACGTAAATGTTATTAAGGTCCGTGAGAAGTGCCAAATAAGTTTAAAGCACAAAAATCAAATAGCTGCAAAATTTAAATCCATGTTGGTCTGGTAGGTAACCATAAATTAAAAAAAAATTTAACTTCAATTCAATTCTCACCTCGTTTGCCCTTACTATTGGTGTACTTATTCTTGTAGACTGTTATATTATGCCCTGCCTTCAAGGTTTTATGCAAAAACTTGTCTCTGCTGCTCTTACAGAGTTAACTCCTAACTATCCTCCACCCTATTGAAAAAAAATTACCTCTCTTAGAAGGACAAAGAATTAAGTCAAAACATATTAAACAAGACTGAGGAGGAATTATGAAATAAAAAAAGGGGGAATATTGTAAAAAGTAAAGTAGAGGTTCCTCTTCAAAGACTTTCCTCCCCATCTAATTAGAAATAAACAGTAACTTCTCTTAGAAGCAAAATTTATTCAAAGACCTGTGCTCCTAAATATTTGCCCTGGCATGCTTATACTGGTCCAAGCAAGCGTTAGGTCATAGCCTGTTCCTCTTCCTTATTTAAAAGTGTTTTTATCTTTCTCAGCATTCCACAAGTTACTTCCTCCTTCCTTTGTTCTCCTCTACCTTTGCCTCTTTTAAAAAGTTCTAAGTTGCTAGCCAATCGGGACAAATACAGAATGTGAGGTCCCGTTCCAGCCAGTGGAAACCGGACACAGCAGTAGTGTGGACATGTCAGGTTATAAATGACCCTGTCTCCTTTGTTCGGTGTACTCTCATGGCAGAACTGCTAGTGAGTGTACCCTTTCTGCAGGAAGTAAAAAATGGCCTTACTAAATAAATTAAATTTATGTTCAAGTCCTATTTCTTTATGACACCGGGGAACAAGCATTTCAAACAATTCCATTCTAATAACCCCAAGTCTTAGCTTTTTACGGAATCAATTGTAAAGTCTAAAGTCCAAAATCTTATCTAAATATCATCAAACAAGATATGCATGAGACTCAAGATTCTATTTATTCAGAGGCAAAATTCCTTCTTAACTGTGAACCTGTGAAACCAAACAAGTTATGTGCTTCCAAAATACAATAGTGGGACAAACATAGGATGGATATTACTATTCCAAAAGGAAGAAAGAGAGGAAGAGAAACAGTCATGGGACTCAAGCAAGTACAAATCATAGCAAAGGAAACGTCCTAAGATCTTACTTAAGGCTGGAGAATAATGCCTTTAAGATAATCATGGCCCACTGGGGCAGCACCACCTCCCTGACCCCGTTGGGTGGAGGACCCATTAAAAGTGGCAGCATGACCCCCACAGGCAGGGAAGGCACTGCCCATGCTGTGTCTCTCTGCTGTGGCCCTGCCCATGAGGCAATTTCCTGTGGAGGGTGGGGTTGCACTCTCAGTGATCTGCTGGCCTTCTCTTCCTTCACTGATCCCCTGGGTGTTGGTCCTACCTTTAGAAATTAAAACAGCACCCCTCCCCCAGCCCATCCACTCTGGGCTTGTGGTGGGAGAGGCAGCCTTGGGGATATCTGAATTGCCTTTAGGATCTCTCTTCTTTTGTCTTGGAGAATCATGCATGTTTGCAGTGAAATTGTTCTATGGTTTGGTCCTGTGGAGTCTAAGAAATCTGACAGTCTTTGGTCATTTTGTCCTGTTTTTGTTTGTTTCCTTTAGTCTCAGTTGGCAGTGTTACCGCTGGTGTAATCTCTTCTCTGTTCCTGGCTTTTATTGAGATGGTTGATCATCTTTACACAGTCCTTTGCATGCAGATGTACGTATTTGGAGTTGAACAGTTTTCTATATAGCCTTTAAAGCTCGAGGCATAGAGTGCACAGTCTCCCTTCTGCATTTCAATTATTGTTAGTCTAGAGGAGAGACAATTACAAATTACATACATGATTTTATTAACGCGGGAAAATAAAAATGAATCATACCTATTGAACTTCAAATACAGGAACTTAATACCATTTTAGGAGATTATGGACCATGCCTGGTCCTAATTCATAAACAAAATATAGCCAACTCAGATAATAAAAATAAAAATTATAAATAATGCGCCACTCTTTTTATCATACATCAGAAACTAGCCAATTCTGAAGTCTAAAATCTCTTCATATGTATACCCAAGTTAAATGAAAACTTTAGAATGTTTATTTTAAAACAAATATTTAAGTGAGAAATAAATTCAGTGTTCAATTTAGAATTTGATACTGTGTTTTGTGGAAAAATAAAACATTTTCTTCAGATATATGCAATTTTACTTGGTAAGGAAATGAAAATAAAATTTCAAATCTAATACATACATACACACATTCACAAGTGTGTATAAGTGTGTGTGTGTGTGTGTGTGCATATGTTTAGGCATTCCATGTGGAGATTTCTATATCTATATATGTGTTTTACTCTGGCATCTTTAATCTTTTGGAGTTATATGATTAATAATGATACTTTGTTTTCTTTCATAAGAGATGGGAAATAGAAAGCTCAAGAAAGAGTGAGGATGTCACTTCAATGTAAAATTGACAAAAAAATAAAAAGATTATGGTCTGATGCTATCCCTATTTAAAAAGACGATGTAATGATCTCTGTTCTGTAACTGAACAATCGGCCACTGTAGGGAGAAAACTATTCTTAAAGAGTTTTTGTTTTGTTGTTTGTTTGTTTTTAG
Seq C2 exon
ACAGAATCTTGCTCCGCTGCCAAGGCTGGAGTGCACTGGTTCAATCTCGGCTCACTGCAAACTCTGCCTCCCAAGTTCAAGTGATTCTCCTGTGTCAGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245648:ENST00000500682:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains