HsaEX1036255 @ hg38
Exon Skipping
Gene
ENSG00000136193 | SCRN1
Description
secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
Coordinates
chr7:29936556-29944179:-
Coord C1 exon
chr7:29943977-29944179
Coord A exon
chr7:29940526-29940629
Coord C2 exon
chr7:29936556-29936721
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCATACCCTTTCTCTTGCAGCTG
3' ss Score
11.86
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
GCTTGGTTTAGAAAGAGGGGAAACAGCTAAAGAAGCCTTAGATGTCATTGTCTCCTTGTTGGAAGAACATGGACAAGGTGGGAATTACTTTGAAGATGCAAACTCCTGCCACAGCTTCCAAAGTGCATATCTGATTGTGGATCGTGATGAAGCCTGGGTGCTCGAGACCATAGGGAAGTACTGGGCTGCCGAGAAAGTCACAG
Seq A exon
CTGTTTCTGAGAACTTGTCTGAACTTAGAAGGGTGAACAAAAAGGAATACAGAATAGTCCTTGTATGTAAAGACCAACTTCTGCTAAAAGTCCCTGATGTGCAG
Seq C2 exon
AAAGCATCACAGTGCAGACTATGATGAACACCTTACGGGACAAAGCCAGCGGAGTGTGCATAGACTCTGAGTTTTTCCTCACCACAGCCAGTGGAGTGTCTGTCCTGCCGCAGAATAGAAGCTCTCCGTGCATTCACTACTTCACTGGAACCCCTGATCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136193_MULTIEX1-2/4=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(31.3=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCAAACTCCTGCCACAG
R:
GTGAATGCACGGAGAGCTTCT
Band lengths:
247-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains