HsaEX0056641 @ hg38
Exon Skipping
Gene
ENSG00000136193 | SCRN1
Description
secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
Coordinates
chr7:29936556-29944179:-
Coord C1 exon
chr7:29943977-29944179
Coord A exon
chr7:29940682-29940876
Coord C2 exon
chr7:29936556-29936721
Length
195 bp
Sequences
Splice sites
3' ss Seq
GGGCTTTGCACTCTCTGCAGAGG
3' ss Score
7.01
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTTGGTTTAGAAAGAGGGGAAACAGCTAAAGAAGCCTTAGATGTCATTGTCTCCTTGTTGGAAGAACATGGACAAGGTGGGAATTACTTTGAAGATGCAAACTCCTGCCACAGCTTCCAAAGTGCATATCTGATTGTGGATCGTGATGAAGCCTGGGTGCTCGAGACCATAGGGAAGTACTGGGCTGCCGAGAAAGTCACAG
Seq A exon
AGGGAGTGAGGTGCATTTGCAGTCAGCTTTCGCTCACCACTAAGATGGATGCAGAGCATCCGGAACTCAGGAGTTACGCTCAGAGCCAAGGTTGGTGGACGGGAGAGGGCGAGTTCAATTTTTCCGAAGTCTTTTCTCCAGTTGAGGATCATCTAGACTGCGGTGCTGGCAAAGACAGCTTAGAAAAACAAGAAG
Seq C2 exon
AAAGCATCACAGTGCAGACTATGATGAACACCTTACGGGACAAAGCCAGCGGAGTGTGCATAGACTCTGAGTTTTTCCTCACCACAGCCAGTGGAGTGTCTGTCCTGCCGCAGAATAGAAGCTCTCCGTGCATTCACTACTTCACTGGAACCCCTGATCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136193_MULTIEX1-1/4=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.143
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(31.3=100)
A:
PF0357710=Peptidase_C69=PD(24.4=80.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCAAACTCCTGCCACAG
R:
GTGAATGCACGGAGAGCTTCT
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development