GgaEX0016770 @ galGal3
Exon Skipping
Gene
ENSGALG00000011176 | SCRN1
Description
NA
Coordinates
chr2:33825999-33831713:-
Coord C1 exon
chr2:33831511-33831713
Coord A exon
chr2:33827749-33827943
Coord C2 exon
chr2:33825999-33826164
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATATGTGGCTCTTTCTGTAGAGG
3' ss Score
7.1
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ACTTGGCCTAGTAAAAGGTTCAACAGCCAAGGAAGCATTGGATGTAATAGTTGCTTTGTTGGAAGAGCATGGGCAAGGAGGAAATTACTATGAAGACGCAAGTTCGTGCCATGCTTTCCAAAGCGCATTTCTGATTGTGGACAGAAATGAAGCCTGGGTACTGGAGACATCTGGAAAGTACTGGGCAGCTGAAAAAATCACAG
Seq A exon
AGGGGGTGAAATGCATTTGCAATCAGCTTTCACTAACTACAAAAATTGATGCTGAGCATCCTGAACTAAGGGATTACGTGAGAAGTCAAGGCTGGTGGAATGGAGACTCAGACTTCAATTTTTCTGAAGTGTTTTCTCTTGCTGCTGACCATTTAGCCTGTTGTTCTGGCAGGGAGAGCCTGGAAAAGCAAAGTG
Seq C2 exon
GTGATGTTTCTGCGCAAACTATGATTGATGTCCTGCGTGACAAGGACAGTGGTGTCTGTGTGGACTCTGAATCTTTCCTTACTACAGCTAGCATAGTGTCTGTTCTGCCTCAGGACCCTAGTTTTCCCTGTGTTCATTACTTCACTGGCACGCCAGACCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011176-'5-14,'5-12,8-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(25.9=100)
A:
PF0357710=Peptidase_C69=PD(25.6=86.4)
C2:
PF0357710=Peptidase_C69=PD(14.8=59.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGTGCCATGCTTTCCAA
R:
GGCGTGCCAGTGAAGTAATGA
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]