BtaEX6027743 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016223 | SCRN1
Description
Bos taurus secernin 1 (SCRN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001110803]
Coordinates
chr4:66832884-66836816:+
Coord C1 exon
chr4:66832884-66833086
Coord A exon
chr4:66834057-66834251
Coord C2 exon
chr4:66836651-66836816
Length
195 bp
Sequences
Splice sites
3' ss Seq
GGACTTTGTATTCTTTACAGAGG
3' ss Score
6.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTTGGTTTAGAGAGAGGGGCAACAGCTAAAGAAGCCTTAGACGTCATCGTCGCCTTGTTGGAAGAACATGGACAGGGTGGGAATTATTATGAAGATGCTAACTCCTGCCACAGCTTCCAAAGTGCATTTCTGATTGTGGACCGTGAGGAGGCGTGGGTGCTGGAGACTGTAGGGAAGTACTGGGCTGCAGAGAAGATCACAG
Seq A exon
AGGGAGTCAAGTGCATTTGCAATCAGCTTTCGCTCACGACTAAAATCGACGCAGAGCATCCGGAACTCAGGAGTTATGCTCAGAGTCAAGGTTGGTGGATGGGAGAGGACGAGTTTAATTTCTCTGAAGTTTTTTCTCCAGCTGATGACCATCTAACCTGCTGTTCAGGCAGAGACACCTTAGAAAAGCAAGAAG
Seq C2 exon
AAAGCATCACTGTGCAGACTATGATTGATGTCCTACGGGACAAAGCCAGTGGAGTCTGCGTAGATTCTGAGTCTTTCCTCACCACAGCCAGTGTCGTGTCTGTCCTGCCTCAGAACGGAAGCTCGCCATGCATCCACTACTTCACTGGGACCCCAGATCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016223-'8-6,'8-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(31.6=100)
A:
PF0357710=Peptidase_C69=PD(26.5=86.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTCGCCTTGTTGGAAGA
R:
CTGGCTGTGGTGAGGAAAGAC
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]