HsaEX0056641 @ hg19
Exon Skipping
Gene
ENSG00000136193 | SCRN1
Description
secernin 1 [Source:HGNC Symbol;Acc:22192]
Coordinates
chr7:29976172-29983795:-
Coord C1 exon
chr7:29983593-29983795
Coord A exon
chr7:29980298-29980492
Coord C2 exon
chr7:29976172-29976337
Length
195 bp
Sequences
Splice sites
3' ss Seq
GGGCTTTGCACTCTCTGCAGAGG
3' ss Score
7.01
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTTGGTTTAGAAAGAGGGGAAACAGCTAAAGAAGCCTTAGATGTCATTGTCTCCTTGTTGGAAGAACATGGACAAGGTGGGAATTACTTTGAAGATGCAAACTCCTGCCACAGCTTCCAAAGTGCATATCTGATTGTGGATCGTGATGAAGCCTGGGTGCTCGAGACCATAGGGAAGTACTGGGCTGCCGAGAAAGTCACAG
Seq A exon
AGGGAGTGAGGTGCATTTGCAGTCAGCTTTCGCTCACCACTAAGATGGATGCAGAGCATCCGGAACTCAGGAGTTACGCTCAGAGCCAAGGTTGGTGGACGGGAGAGGGCGAGTTCAATTTTTCCGAAGTCTTTTCTCCAGTTGAGGATCATCTAGACTGCGGTGCTGGCAAAGACAGCTTAGAAAAACAAGAAG
Seq C2 exon
AAAGCATCACAGTGCAGACTATGATGAACACCTTACGGGACAAAGCCAGCGGAGTGTGCATAGACTCTGAGTTTTTCCTCACCACAGCCAGTGGAGTGTCTGTCCTGCCGCAGAATAGAAGCTCTCCGTGCATTCACTACTTCACTGGAACCCCTGATCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136193_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.125
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(31.3=100)
A:
PF0357710=Peptidase_C69=PD(24.4=80.3)
C2:
PF0357710=Peptidase_C69=PD(16.1=25.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCAAACTCCTGCCACAG
R:
GTGAATGCACGGAGAGCTTCT
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)