RnoEX6013635 @ rn6
Exon Skipping
Gene
ENSRNOG00000009636 | Scrn1
Description
secernin 1 [Source:RGD Symbol;Acc:1560999]
Coordinates
chr4:84692534-84698509:-
Coord C1 exon
chr4:84698307-84698509
Coord A exon
chr4:84695691-84695885
Coord C2 exon
chr4:84692534-84692699
Length
195 bp
Sequences
Splice sites
3' ss Seq
AGGCGTTGGGCTCTTTGCAGAGG
3' ss Score
4.71
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTTGGTTTAGAACGAGGGACAACAGCTAAAGAAGCCTTAGACATCATCGTCTCCTTATTGGATGAGCATGGACAAGGTGGAAATTATTATGAAGATGCCCATTCCTGCCATAGCTTCCAAAGTGCATATCTGCTGGTGGATCGTGATGAAGCCTGGGTGCTGGAGACTGTAGGGAAGTATTGGGCTGCTGAGAGAATCACAG
Seq A exon
AGGGAGTGAGGTGCATTTGCAATCACCTTTCACTCACTACTAAGATGGACGAAGAACACCCAGAACTCAGGACGTATGCTCAGAGTCAAGGCTGGTGGACCGGAGAGGATGAATTCAATTTTGCCCAAGTCTTTTCTCCCGCTGATGACCATTTGGACTGCTGTGCAGGCAAAGACAGCTTAGAAAAGCAAGAAG
Seq C2 exon
AAAGCATCACGGTGCAGACGATGATTAACATCTTACGAGATAAAGCCAGTGGCGTTTGCATAGATTCTGAGTCTTTCCTTACCACAGCCAGTATAGTGTCTGTCCTGCCTCAGAACAGAAGTTCACCGTGCATTCACTACTTCACCGGGACCCCAGATCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009636-'16-19,'16-13,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.036
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(34.2=100)
A:
PF0357710=Peptidase_C69=PD(27.1=81.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGCATGGACAAGGTGG
R:
TTCTGAGGCAGGACAGACACT
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]