MmuEX6004435 @ mm10
Exon Skipping
Gene
ENSMUSG00000019124 | Scrn1
Description
secernin 1 [Source:MGI Symbol;Acc:MGI:1917188]
Coordinates
chr6:54520700-54525711:-
Coord C1 exon
chr6:54525509-54525711
Coord A exon
chr6:54522760-54522954
Coord C2 exon
chr6:54520700-54520865
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACACATCGAACTCTTTGCAGAGG
3' ss Score
6.06
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTTGGCTTAGAACGAGGGACAACAGCTAAAGAAGCCCTAGACATCATTGTTTCTTTATTGGATGAGCACGGACAAGGTGGAAATTATTATGAAGATGCCCACTCCTGCCATAGCTTCCAAAGTGCATATCTGCTGGTGGACCGAGATGAAGCCTGGGTGCTGGAGACTGTAGGGAAGTATTGGGCTGCTGAGAGAATCACAG
Seq A exon
AGGGAGTGAGGTGCATTTGCAACCATCTTTCCCTCGCGACTAAGCTGGATGAAGAGCACCCAGAACTCAGGACTTATGCTCAGAGTCAAGGCTGGTGGACGGGAGACGACGAATTCAACTTTGCCCAGGTTTTTTCTCCAGCCGATGACCGTTTGGACTGCTGTGCAGGCCAAGACAGCTTAGAAAAGCAAGAAG
Seq C2 exon
AAAGCATCACTGTGCAGACGATGATTAACATCTTACGAGACAAAGCCAGTGGTGTTTGCATAGATTCTGAGTCTTTCCTCACCACAGCCAGTATAGTGTCTGTCTTGCCTCAGAACAGAAGTTCACCGTGTATCCACTACTTCACCGGGACCCCAGATCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019124-'14-13,'14-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.041
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(35.1=100)
A:
PF0357710=Peptidase_C69=PD(27.8=81.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATAGCTTCCAAAGTGCA
R:
GGTCCCGGTGAAGTAGTGGAT
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types