GgaEX0016770 @ galGal4
Exon Skipping
Gene
ENSGALG00000011176 | SCRN1
Description
secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
Coordinates
chr2:34385997-34391711:-
Coord C1 exon
chr2:34391509-34391711
Coord A exon
chr2:34387747-34387941
Coord C2 exon
chr2:34385997-34386162
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATATGTGGCTCTTTCTGTAGAGG
3' ss Score
7.1
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ACTTGGCCTAGAAAGAGGTTCAACAGCCAAGGAAGCATTGGATGTAATAGTTGCTTTGTTGGAAGAGCATGGGCAAGGAGGAAATTACTATGAAGACGCAAGTTCGTGCCATGCTTTCCAAAGCGCATTTCTGATTGTGGACAGAAATGAAGCCTGGGTACTGGAGACATCTGGAAAGTACTGGGCAGCTGAAAAAATCACAG
Seq A exon
AGGGGGTGAAATGCATTTGCAATCAGCTTTCACTAACTACAAAAATTGATGCTGAGCATCCTGAACTAAGGGATTACGTGAGAAGTCAAGGCTGGTGGAATGGAGACTCAGACTTCAATTTTTCTGAAGTGTTTTCTCTTGCTGCTGACCATTTAGCCTGTTGTTCTGGCAGGGAGAGCCTGGAAAAGCAAAGTG
Seq C2 exon
GTGATGTTTCTGCGCAAACTATGATTGATGTCCTGCGTGACAAGGACAGTGGTGTCTGTGTGGACTCTGAATCTTTCCTTACTACAGCTAGCATAGTGTCTGTTCTGCCTCAGGACCCTAGTTTTCCCTGTGTTCATTACTTCACTGGCACGCCAGACCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011176-'9-20,'9-17,11-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(30.5=100)
A:
PF0357710=Peptidase_C69=PD(25.6=86.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGTGCCATGCTTTCCAA
R:
GGCGTGCCAGTGAAGTAATGA
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]