HsaEX1036483 @ hg38
Exon Skipping
Gene
ENSG00000248445 | SEMA6A-AS1
Description
SEMA6A antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51110]
Coordinates
chr5:116449624-116498555:+
Coord C1 exon
chr5:116449624-116449817
Coord A exon
chr5:116471191-116471255
Coord C2 exon
chr5:116498461-116498555
Length
65 bp
Sequences
Splice sites
3' ss Seq
AAATTCCACCTCTTCTTTAGTTG
3' ss Score
4.05
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TAAGGGTCCTCCTCCCTTCAATTGTGACATCACAGTTGGTTGCTGTGGAAATGATTGTCCTGTGACAAAGGATTGTGACTTAAGTAGAAGCAGCAAATATCTCTTAAGAAATAAAGATTCTGTGATCCAACAAATACCCTTGGTAATAAAAGGCAGTCAAGGCAATTCACCATAAGGAAAGAGTGTACAAGACG
Seq A exon
TTGCCTCAAGACCTGAAAATGAATGAGCATCATCCCTTAAAGTGTTAACACGGAAGCATTAATAA
Seq C2 exon
GAAAAATACAACAGAGAAAGATAACAGGCCGACTCACGTGAATATAAAACGAGCGGGAAGGGCAGTTGGCTTAGAAAATTCCCTTGCCAGCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248445_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATCCAACAAATACCCTTGGT
R:
AGTAGCTGGCAAGGGAATTTTCT
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains