HsaEX1039111 @ hg38
Exon Skipping
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8750621-8811335:-
Coord C1 exon
chr11:8811247-8811335
Coord A exon
chr11:8810517-8810970
Coord C2 exon
chr11:8750621-8750725
Length
454 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTCTCCCCTCTGAGCTG
3' ss Score
1.19
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAGATGAGAGACTGCTTAGGCGCCACCACTAGTACCATGAGTCCCTGCACTGGTTAAAGCCATCGCCACAACCTGGACAGGCAGCAAG
Seq A exon
CTGTTCAAGCAAGTTCCCAGGAGCAGTTCAGAGCCCCTGTTGGACTGGAAGGGAGGTAGGAGGAGTGGAATGCATGCAAAAACCGAGCTGATCAAAAGACAGTGCTGTTTCATGGAAGCCTCCCAGAACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGTGAGAAAGAAAGAAAAAGAGAGCGCCCTTGTGCACGCGCTAGGCCAAGAGCGCGCCGCTGTGCGCGCGCCCGCCTAGCGAGGACAGGGTCTCCATGACAACCGGCCTGGCCGGCTAGCAGTGCTCTGCTCACTTGGCTGCGAGGAGCGCCACGAAAGGTCAGAGGAAGGAGCTGTGGGAAGCTCGCAGCAGGTATCGGAGCTTAAGCCAGTGGATTTGGGGGCCCTGGGCTCCCTAGCCGGCTGCGGTGTGAGAATGGAGTGGGCAGGAAAGCAGCGGGACTTTCAG
Seq C2 exon
GGCTCTGGGTTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444_MULTIEX2-11/16=10-13
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGAGACTGCTTAGGCGC
R:
CTGCTCAGAGTCCCCCGAG
Band lengths:
191-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains