HsaINT1033131 @ hg38
Intron Retention
Gene
ENSG00000255159 | RP11-318C2.1
Description
NA
Coordinates
chr11:8785401-8787286:+
Coord C1 exon
chr11:8785401-8785462
Coord A exon
chr11:8785463-8787053
Coord C2 exon
chr11:8787054-8787286
Length
1591 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
3' ss Seq
AATTCTATTTTACCAAACAGGAA
3' ss Score
7.61
Exon sequences
Seq C1 exon
CCCCTCACTCTTCCTGCCTCTAACCGAAAAGGAGGATACAGACCAAGGAGCACTTCATGAAG
Seq A exon
GTAGTCGCCTCCCTGCCCTGCTGTTTTTCACCTTCAGGAAGAATCACTCCCTCCCAAGTAGGACCTCTCCCTGGTCACTATAATCCCATGATTTGTAATGTGGGCTTCATTCCGCAAAAGCCCAGGGCTGGTGTTATCTAGGAGTGATGGCAGTCATTTCCAGATCATGAGCAGTCGCACAGATAAGGCAAAGGGCAACTCCTGCCTAGCATGTGTGACCCAAGAGATGACAGAGAAGAGAAGGGAGGAATGCACTCCTTCACCTGGTCCCTCAGCACTGAGCCAGCCTCCCATTTGTACATGGAAGGAAAGGCCAATACCTGATACTTAAGAAAGAATTAACTGTTAGGTCAGCCCCCTTCCCTCCCAGGCTAGTATAAGGATTAAACAAAATAATGTTCTAATAGAAGCAAGAATACAAGTTACATGGCTCTAACTTGGCTCCAATTTCTAGCTGGTAGGAAGTCAATCCTTTTACCTGTTTTCCAAAGTCTATGGGTCTGCCTTTAGTTGGAAATACAGAATATAGAAGCTATTACAGAACTCGGGGTCTTGAATTACTGTCCAACTCTTCACAAAATTCCATCTGAAAGAAGTGATATTTAAGGAAGACTGTCTAAGGGGTATGATATAAATCCATGCCCCTGCATATTTTAGGCTCCATTTTCTAGCAGATCACCTGAAAGCTACACAGATGTCATTAGCTCAGCTCCTCACAGAGTGGTTTTCACTAAGTTGCAATTTCATGTAAAACATCTGCATTTTGTCTGCAGTCTCTGTGAGAGCTATAGAAAACCAAGACTGCATAAGCACTGGTTATAAAAATAGCAAGGAAACTGTCGCTGTAGTGGTAAAAACAAGAAAAAAATAAATAAATAAAACATACTTCTTGGTTTAAAAAAAGTAAAAATTACTATTATATCATTCAATATTGCCTTACATATCCATATAAATTTCATTAAAACATGAAACTCATTTAAATAACTTTGTCCTTTGAGAAAGTGGTATGTTGACTGCCAAGGAGAAGGCCATTCACAGCAATCACGTTAATGAACAGGATTAGGAAGGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGAGGTCTCTTGAAACCAGGACTTTGACATCAGGCTGGGCAACATGGCAAGAACCCATCTCTACAAAAAGTTTAAAAATTAGCTGGGCATGGTGGTGCACCTCTGGAGTCCTAGCTACTCAGGAGGCTGAGGCGGAAGGATCACTTGAGCCCAGGAGGTCGAGGCTTCAAGGCTGCAGTGATCTTGACTGCGCCACTGCACTCCAGCCTGGGCGACAGACCAAGACAATGTCTCAAAGAAAACAAACAAACAAACAACAAAAAAAAACAAGATTAGAACAGCTGCATGCTCTCCTTTTCTTCGGTGCTGATGTTATTTCTGTTTCTATGTTATTAACATGACTATGGCCTCTCTTTACCAGTTATCTACTGTGTGCCAAGCATTGTTCCCAGGTGTTAATTATGTTAATTCATTTAATACTGTAACACAATCCTATGAGGTAAATGTTACCAATTCTATTTTACCAAACAG
Seq C2 exon
GAAAACCAAGGCCCAAGTCATACAGCTAGTAAAAGGAGGAGCCACAATTCAAACCAGGACTGATTTCAAAATTCGCATTCCTTCCACTATGCCATGGAAAGTACAGTAGGGTGTTTTTATGTCAACTGCAGCCAGACACATCAATTTTCTCCTCTGAGAGGACAGGATATAAATCTGAAGAAACAATGTATATGAAAATATGCTCTATGCTATAAGGCAAGATTTATATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000255159:ENST00000527725:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCACTCTTCCTGCCTCTA
R:
ATAAATCTTGCCTTATAGCATAGAGC
Band lengths:
288-1879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains