HsaEX1039123 @ hg38
Exon Skipping
Gene
ENSG00000073849 | ST6GAL1
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10860]
Coordinates
chr3:186963785-187038873:+
Coord C1 exon
chr3:186963785-186963926
Coord A exon
chr3:186974290-186974474
Coord C2 exon
chr3:187038742-187038873
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCATATCCAACCATCCACAGGTG
3' ss Score
7.52
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCAAGGGGAGAGCCAGTTGCGCAGAGCCCTGCAACCAGCAGTCCAGGGAGAAGTGGTGAATGTCATGGAGCCCAGCTGAAATGGACTGGCCCCCTTGAGCCTGTCCCAAGCCCTGGTGCCAGGTGTCCATCCCCGTGCTGAG
Seq A exon
GTGCTGCCGATACTGCAGGAACCGACTGAGCTTGGATCCCACACCTTACAGACCCGGAGCATCTTTTCTGTTGTTTATTTTTGGGTTAGCTCATAACTCACTTTATCACTCAGCCGAACAGTGAGCCACCATGGACCATGGTGGTTTTGATCATCATACAGATATTTAAAGACAACTTTATTGAG
Seq C2 exon
ATGAGTTTTGATCATCCTGAGAAAAATGGGCCTTGGCCTGCAGACCCAATAAACCTTCCCTCCCATGGATAATAGTGCTAATTCCTGAGGACCTGAAGGGCCTGCCGCCCCTGGGGGATTAGCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073849_MULTIEX1-5/23=4-12
Average complexity
S
Mappability confidence:
96%=100=96%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGCAGTCCAGGGAGAAG
R:
CTGCTTCTGGCTAATCCCCCA
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains