HsaEX1039124 @ hg38
Exon Skipping
Gene
ENSG00000073849 | ST6GAL1
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10860]
Coordinates
chr3:186974290-187038873:+
Coord C1 exon
chr3:186974290-186974474
Coord A exon
chr3:186980002-186980059
Coord C2 exon
chr3:187038742-187038873
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCGTATACCCTACAGGCA
3' ss Score
8.02
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGCTGCCGATACTGCAGGAACCGACTGAGCTTGGATCCCACACCTTACAGACCCGGAGCATCTTTTCTGTTGTTTATTTTTGGGTTAGCTCATAACTCACTTTATCACTCAGCCGAACAGTGAGCCACCATGGACCATGGTGGTTTTGATCATCATACAGATATTTAAAGACAACTTTATTGAG
Seq A exon
GCAGATGCTGTCATCATTCTGAAATTCCAGATACGTAACTGAGGTTCAGAGAGGTTAA
Seq C2 exon
ATGAGTTTTGATCATCCTGAGAAAAATGGGCCTTGGCCTGCAGACCCAATAAACCTTCCCTCCCATGGATAATAGTGCTAATTCCTGAGGACCTGAAGGGCCTGCCGCCCCTGGGGGATTAGCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073849_MULTIEX1-6/23=5-12
Average complexity
C3
Mappability confidence:
96%=100=96%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTCAGCCGAACAGTGAG
R:
GTTTATTGGGTCTGCAGGCCA
Band lengths:
135-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains