HsaEX1039133 @ hg38
Exon Skipping
Gene
ENSG00000184005 | ST6GALNAC3
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:19343]
Coordinates
chr1:76412008-76627559:+
Coord C1 exon
chr1:76412008-76412417
Coord A exon
chr1:76576846-76577073
Coord C2 exon
chr1:76627452-76627559
Length
228 bp
Sequences
Splice sites
3' ss Seq
TCCATTCCCATGATATCCAGTAC
3' ss Score
2.21
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CCTTTGCAACTGGACTGTGACCTTTGTGCCATAGTGTCAAACTCAGGTCAGATGGTTGGCCAGAAGGTGGGAAATGAGATAGATCGATCCTCCTGCATTTGGAGAATGAACAATGCCCCCACCAAAGGTTATGAAGAAGATGTCGGCCGCATGACCATGATTCGAGTTGTGTCCCATACCAGCGTTCCTCTTTTGCTAAAAAACCCTGATTATTTTTTCAAGGAAGCGAATACTACTATTTATGTTATTTGGGGACCTTTCCGCAATATGAGGAAAGATGGCAATGGCATCGTTTACAACATGTTGAAAAAGACAGTTGGTATCTATCCGAATGCCCAAATATACGTGACCACAGAGAAGCGCATGAGTTACTGTGATGGAGTTTTTAAGAAGGAAACTGGGAAGGACAG
Seq A exon
TACAGAGTGACCATGCAGTGTTGATTGATCGAACAGCAACCACCACATACATGTCCTGCCCCACCACAAAAGGAAGGAAGGAATAAAAGAAAGAAAGAAAGAAACAAACAAACAAACAAACAAAACTAAGCAAGACAAAACAAATACCCATGTCAGTGGTTCAAAGATTAAGATTGTGGCTTTGTGTAAAGTTCTTTCCCTTTGTAGACTTGCTGCATAATTATTCAG
Seq C2 exon
AGTCCAGTCTGGCTCATATCTCAGCACAGGGTGGTTTACCTTCCTTCTGGCCATGGACGCCTGTTATGGCATTCACGTCTACGGGATGATAAATGACACCTACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184005_MULTIEX2-2/5=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PD(84.9=86.1)
A:
NO
C2:
PF0077713=Glyco_transf_29=FE(14.5=100)
Main Inclusion Isoform:
ENST00000328299fB27016
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCATGACCATGATTCGAGT
R:
GGTAAACCACCCTGTGCTGAG
Band lengths:
304-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains