HsaEX0062039 @ hg38
Exon Skipping
Gene
ENSG00000184005 | ST6GALNAC3
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:19343]
Coordinates
chr1:76412008-76634601:+
Coord C1 exon
chr1:76412008-76412417
Coord A exon
chr1:76627452-76627559
Coord C2 exon
chr1:76628620-76634601
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCATTTCCCTCAGAGT
3' ss Score
10.34
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCTTTGCAACTGGACTGTGACCTTTGTGCCATAGTGTCAAACTCAGGTCAGATGGTTGGCCAGAAGGTGGGAAATGAGATAGATCGATCCTCCTGCATTTGGAGAATGAACAATGCCCCCACCAAAGGTTATGAAGAAGATGTCGGCCGCATGACCATGATTCGAGTTGTGTCCCATACCAGCGTTCCTCTTTTGCTAAAAAACCCTGATTATTTTTTCAAGGAAGCGAATACTACTATTTATGTTATTTGGGGACCTTTCCGCAATATGAGGAAAGATGGCAATGGCATCGTTTACAACATGTTGAAAAAGACAGTTGGTATCTATCCGAATGCCCAAATATACGTGACCACAGAGAAGCGCATGAGTTACTGTGATGGAGTTTTTAAGAAGGAAACTGGGAAGGACAG
Seq A exon
AGTCCAGTCTGGCTCATATCTCAGCACAGGGTGGTTTACCTTCCTTCTGGCCATGGACGCCTGTTATGGCATTCACGTCTACGGGATGATAAATGACACCTACTGCAA
Seq C2 exon
GACAGAAGGGTATAGAAAAGTCCCCTACCATTATTATGAACAAGGAAGAGATGAGTGTGATGAATATTTTCTTCATGAACATGCCCCATATGGGGGTCATAGGTTTATCACTGAAAAGAAAGTGTTTGCTAAATGGGCCAAGAAGCACAGGATAATATTTACACATCCAAACTGGACATTGTCTTGATAATGGTTTTCCTGATCTTGCCGCATCACTTAATGTGATCCCCATACTGCAACTGTGATGCTGATGATGCTAATGGAGATGATGGTAATGATAAAGACAACAACAATGATTATCAAGTTCCTGTACACTCTCAGATGTGGATGGTGACTCTGCTAGTAATTTAAACTTGGCATTTCATGGAGGATGGTTGTGCTCATGATGTTCTTTCTGGAGGTTCAACACTACGTACCGCACTTTATAATTTAACTGGAATTGAGATGAAGGCCAGTGACATGACAACTGTGACCTAAGAAATGGGAAGATTATCTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184005_MULTIEX2-4/5=C1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PD(84.9=86.1)
A:
PF0077713=Glyco_transf_29=FE(14.5=100)
C2:
PF0077713=Glyco_transf_29=PD(22.9=90.5)
Main Skipping Isoform:
ENST00000328299fB27015
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATCTATCCGAATGCCCA
R:
CCTGTGCTTCTTGGCCCATTT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development