RnoEX0086472 @ rn6
Exon Skipping
Gene
ENSRNOG00000056894 | St6galnac3
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:RGD Symbol;Acc:3677]
Coordinates
chr2:259379273-259592305:-
Coord C1 exon
chr2:259591896-259592305
Coord A exon
chr2:259382656-259382763
Coord C2 exon
chr2:259379273-259380062
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCTCTGTCCCTCCAGAGT
3' ss Score
10.53
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
CCTTTGCAGCTGAACTGTAACCATTGTGCCGTCGTGTCGAACTCGGGTCAGATGGTTGGACAGAAGGTGGGGGAAGAGATAGACCGTGCGTCCTGCATCTGGAGAATGAACAATGCCCCCACCAAGGGTTTCGAGGAAGATGTCGGCTACATGACGATGGTCCGAGTGGTGTCACACACCAGCGTCCCTCTCTTGCTGAAAAACCCGGACTATTTTTTCAAGGAGGCGAGCACAACCATTTACGTCATCTGGGGCCCTTTCCGCAACATGAGGAAGGACGGGAACGGGATCGTGTACAACATGCTAAAGAAGACGGTCGACACCTACCCAGACGCGCAGATCTACGTGACCACGGAGCAGCGGATGACGTACTGCGACGGGGTGTTTAAGGATGAAACTGGGAAAGACAG
Seq A exon
AGTCCAGTCTGGCTCCTATCTCAGCACCGGGTGGTTCACCTTTATCCTGGCCATGGACGCCTGCTACAGTATCCACGTCTACGGGATGATAAATGAGACCTACTGCAC
Seq C2 exon
CAGTACCCTATAAGCTTAGATACCTTCAATGTTTTTGCTTCTGTTCGTGGCTCTCTGTTCCAGAGCTCGGGGACAATGGCTAGGAATGGTAGCAGAGAAATACAGTTTCCAGGTCTAGACCTGAGACAGCTTTCTTCTCTGTAGACTCAATGATCCTTAAATATTAGAGGTTGATTTTCTGAGACACTTCCAAGCATCCATAAATATCTTGGCACAATGATTCAAAAGCTAAAACCAAGCTGCATTGAGTGTTTTAGAGCTGGAAATGACAAAACACCTCACCTGTGCCACCTCGACAGGGCTTTCCTACGATTAAGGGCTATGCTAACTCATTAAGATGTGCATCTTTCCTACCCTCTGCACCCATTTTGATATCCCACACCCCGACCCATAAGCTTTGCCCAGCCCCATCTTCACCGCTGGAGAGGAGTGGTCATTCTGTTGTTTGCTTGTGTGATTTTTTAGTTATGAATGTTAGTTCCTATAGAGCTGATAGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056894_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(52.7=100)
A:
PF0077713=Glyco_transf_29=FE(14.0=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCGAGCACAACCATTTA
R:
GGAACAGAGAGCCACGAACAG
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]