HsaEX0062039 @ hg19
Exon Skipping
Gene
ENSG00000184005 | ST6GALNAC3
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:19343]
Coordinates
chr1:76877693-77100286:+
Coord C1 exon
chr1:76877693-76878102
Coord A exon
chr1:77093137-77093244
Coord C2 exon
chr1:77094305-77100286
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCATTTCCCTCAGAGT
3' ss Score
10.34
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCTTTGCAACTGGACTGTGACCTTTGTGCCATAGTGTCAAACTCAGGTCAGATGGTTGGCCAGAAGGTGGGAAATGAGATAGATCGATCCTCCTGCATTTGGAGAATGAACAATGCCCCCACCAAAGGTTATGAAGAAGATGTCGGCCGCATGACCATGATTCGAGTTGTGTCCCATACCAGCGTTCCTCTTTTGCTAAAAAACCCTGATTATTTTTTCAAGGAAGCGAATACTACTATTTATGTTATTTGGGGACCTTTCCGCAATATGAGGAAAGATGGCAATGGCATCGTTTACAACATGTTGAAAAAGACAGTTGGTATCTATCCGAATGCCCAAATATACGTGACCACAGAGAAGCGCATGAGTTACTGTGATGGAGTTTTTAAGAAGGAAACTGGGAAGGACAG
Seq A exon
AGTCCAGTCTGGCTCATATCTCAGCACAGGGTGGTTTACCTTCCTTCTGGCCATGGACGCCTGTTATGGCATTCACGTCTACGGGATGATAAATGACACCTACTGCAA
Seq C2 exon
GACAGAAGGGTATAGAAAAGTCCCCTACCATTATTATGAACAAGGAAGAGATGAGTGTGATGAATATTTTCTTCATGAACATGCCCCATATGGGGGTCATAGGTTTATCACTGAAAAGAAAGTGTTTGCTAAATGGGCCAAGAAGCACAGGATAATATTTACACATCCAAACTGGACATTGTCTTGATAATGGTTTTCCTGATCTTGCCGCATCACTTAATGTGATCCCCATACTGCAACTGTGATGCTGATGATGCTAATGGAGATGATGGTAATGATAAAGACAACAACAATGATTATCAAGTTCCTGTACACTCTCAGATGTGGATGGTGACTCTGCTAGTAATTTAAACTTGGCATTTCATGGAGGATGGTTGTGCTCATGATGTTCTTTCTGGAGGTTCAACACTACGTACCGCACTTTATAATTTAACTGGAATTGAGATGAAGGCCAGTGACATGACAACTGTGACCTAAGAAATGGGAAGATTATCTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184005-'10-17,'10-16,15-17
Average complexity
S
Mappability confidence:
89%=88=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(54.6=100)
A:
PF0077713=Glyco_transf_29=FE(14.5=100)
C2:
PF0077713=Glyco_transf_29=PD(22.9=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATCTATCCGAATGCCCA
R:
CCTGTGCTTCTTGGCCCATTT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)