GgaEX6044547 @ galGal4
Exon Skipping
Gene
ENSGALG00000009027 | ST6GALNAC3
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:19343]
Coordinates
chr8:18285630-18351262:-
Coord C1 exon
chr8:18350853-18351262
Coord A exon
chr8:18287377-18287484
Coord C2 exon
chr8:18285630-18285816
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTGTATTTTTACAGAGT
3' ss Score
7.86
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCTCTACAACTGGACTGTGACCTCTGTGCCATTGTTTCCAATTCAGGACAGATGGTAGGCCAGAAGGTGGGAGCTGAGATAGACAAGTCCTCCTGCATTTGGAGAATGAACAATGCACCCACAAAGGGCTATGAGGAGGATGTTGGGAAGAGGACGACCATCAGAGTGGTCTCTCACACAAGCGTGCCTCTCCTACTCAAGAATCCCGAGTACTTTTTCAAAGAAACCAACAGCACTCTTTATGTGATCTGGGGACCTTTTCGAAACATGAGGAAGGATGGAAATGGCATTGTATACAACATGCTGAAGAAAGCTGTTGACAGCTACCCAACTGCCAAAATCTATGTGACAACGGAAAAGCGCATGAGTTACTGCGATGCAGTGTTTAAGAAGGAGACAGGAAAAGACCG
Seq A exon
AGTCCAGTCAGGTTCATATCTCAGTACGGGTTGGTTTACCTTAATTTTGGCTATGGATGCCTGCTATGGAATTCACGTCTATGGGATGATAAATGACACCTACTGCAA
Seq C2 exon
GTCAGAAGGCTTTCGCAAAGTTCCCTACCATTATTACGAGCCAGGAAGAGATGAGTGTGAAGAATACTTTCTGCATGAAAATGCTCCTTATGGAGGCCATAGGTTTATCACAGAAAAAAAAGTATTTGCTAAATGGGCCAAGAAGCACACAATAACATTTACACACCCCAACTGGACGGTATCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009027-'1-5,'1-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(52.3=100)
A:
PF0077713=Glyco_transf_29=FE(13.8=100)
C2:
PF0077713=Glyco_transf_29=PD(21.9=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTACCCAACTGCCAAA
R:
TGTGTGCTTCTTGGCCCATTT
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]