DreEX0075596 @ danRer10
Exon Skipping
Gene
ENSDARG00000058473 | st6galnac3
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1329]
Coordinates
chr2:9532141-9584404:-
Coord C1 exon
chr2:9583995-9584404
Coord A exon
chr2:9538416-9538523
Coord C2 exon
chr2:9532141-9532931
Length
108 bp
Sequences
Splice sites
3' ss Seq
ACCTCATTTTATGTTGGCAGGAT
3' ss Score
7.16
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCGCTGAAGCTGCATTGTGAGGTCTGCAGTGTAGTGTCCAGCTCTGGCCAGATATTGGGACGTGAGGCAGGGGCTGACATTGACCAGTCCTCTTGCATATGGAGAATGAACAATGCACCCACCCGGGGCTTTGAGAGGGATGTGGGACACAGGACAGACCTGAGGGTTGTGTCTCACACAAGTGTTCCTCTGCTAATTCAAAAACCCCAGCACTTCTTCGGACAGGGGAATGAGACCGTCTATGTGGTCTGGGGACCACTGCGCAACATGAGGCAGGATGGGAAAGGCATTGTTTACAACATGCTGCGACAAGCGGTTGAAAACTACCCACAGGCTCGCATTTACGTCACCACAGAAGAGCGCATGAATTACTGCGACACTGTTTTCAAGAAGGAGACCGGCAAAGACAG
Seq A exon
GATTCAGTCGGGGTCGTACCTGAGCACTGGTTGGTTCACGCTTATTCTGGCAATGGACATGTGCAAGGAGATTCGAGTCTACGGCATGATCAATGACACATACTGCAA
Seq C2 exon
ATCAGAAGGCTACAAGAAGGTGCCATACCACTACTATGAAGCAGGGAGCCGTGACGAATGTGCAGAATACCTCCTCCATGAGAGTGCTCCTTACGGCGGCCATCGCTTTATCACTGAAAAGGCAGTTTTTGCAAAGTGGGCTAAGACGCACCCCATCAAATTTTTCAGTCCGGAGTGGCAGCTGTCGTGACCCAGACTCCCATTCTTTCCGAAAATTCCCTAGCGCTACCACCCTGTTGGCTAGTTCCCACTTCATCACAATGTAAACACAAACTTGCTGTGCAGTGGCAAACAAATCATTCCGATTTGTGATTTCAAACTGCAGTTTTCTGAGGAAAGTAACTACCCTACACCATAAGGAAACATCTAACCACATTTATCGAAACTGATGTCGATTGTTGCATGTTCTTATTTTGTTCTCACCTGGAAAGTCAAGTAGTTAAACATTTTTTCAGGGGCACATCAACGAAAACACATTACAAACTTGTTCAATCTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058473_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(50.4=100)
A:
PF0077713=Glyco_transf_29=FE(13.3=100)
C2:
PF0077713=Glyco_transf_29=PD(21.5=90.6)
Main Skipping Isoform:
ENSDART00000146715fB6320
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCTCGCATTTACGTCA
R:
TTTGATGGGGTGCGTCTTAGC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]