MmuEX6074801 @ mm10
Exon Skipping
Gene
ENSMUSG00000052544 | St6galnac3
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:MGI Symbol;Acc:MGI:1341828]
Coordinates
chr3:153198266-153411871:-
Coord C1 exon
chr3:153411462-153411871
Coord A exon
chr3:153206618-153206725
Coord C2 exon
chr3:153198266-153205591
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTTCTGTTCCTCCAGAGT
3' ss Score
9.04
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCTTTGCAACTGAACTGTAACCACTGTGCCATCGTGTCAAATTCAGGTCAAATGGTCGGGCAGAAGGTGGGGGAAGAGATAGACCATGCATCCTGCATCTGGAGAATGAACAACGCCCCAACCAAGGGCTTTGAGGAAGATGTCGGCTACATGACAATGGTCCGAGTTGTGTCACATACCAGTGTCCCTCTCTTGCTGAAAAATCCTGACTATTTTTTCAAAGAAGCAAGCAGGACCATTTATGTTATCTGGGGCCCTTTCCGCAACATGAGGAAGGATGGTAATGGCATCGTGTACAACATGTTAAAGAAGACAGTTGATGCCTATCCAGATGCGCAGATCTACGTGACCACAGAGCAGCAGATGACTCACTGCGATAGAGTGTTTAAGGATGAGACTGGAAAGGACAG
Seq A exon
AGTCCAGTCTGGCTCCTACCTCAGCACTGGCTGGTTTACCTTTATCCTGGCTATGGATGCCTGCTACAGTATCCACGTCTACGGGATGATAAATGAAACCTACTGCAA
Seq C2 exon
GACAGAAGGGTATAGAAAAGTCCCCTATCACTACTATGAACAAGGGAAAGATGAGTGTAACGAATATCTTCTCCATGAACATGCCCCGTATGGGGGACACAGGTTCATCACCGAGAAGAAAGTGTTTGCCAAGTGGGCCAAGAAGCACAGAATAGTATTCACACACCCGAACTGGACGCTGTCCTGATGCCGTGCTTCCCGACCATGACACTGCAGCTGTGGTGAAGAGAGGCTGATGGTGCTGACGGTGTAGGCAGGATGTTCAGGGTGTGACCATGGCCCTGGACATTCTCTGGTGTGGATACTGACTCTGTTAGTAATTTGAACTTGGCGTTCCATGGGAGGCGGTCATGTTCATTCTGATCTTTCTGGTGGTTCGGCCCTATCAATTGCACTTTAAAACTTACCTACGGTTGAAATGAAGGCCAGTGACCTGATGGCTGTGACTAAAGAAAACACGAAGATTACCTTTCAAGATAGCTGCTCAGAATTCTTCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052544-'28-30,'28-29,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PD(82.9=95.6)
A:
PF0077713=Glyco_transf_29=FE(31.3=100)
C2:
PF0077713=Glyco_transf_29=PD(22.3=88.9)
Main Skipping Isoform:
ENSMUST00000200397fB3942
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTATCCAGATGCGCAGATC
R:
ATTCTGTGCTTCTTGGCCCAC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types