GgaEX6044547 @ galGal3
Exon Skipping
Gene
ENSGALG00000009027 | ST6GALNAC3
Description
NA
Coordinates
chr8:20087861-20153493:-
Coord C1 exon
chr8:20153084-20153493
Coord A exon
chr8:20089608-20089715
Coord C2 exon
chr8:20087861-20088047
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTGTATTTTTACAGAGT
3' ss Score
7.86
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCTCTACAACTGGACTGTGACCTCTGTGCCATTGTTTCCAATTCAGGACAGATGGTAGGCCAGAAGGTGGGAGCTGAGATAGACAAGTCCTCCTGCATTTGGAGAATGAACAATGCACCCACAAAGGGCTATGAGGAGGATGTTGGGAAGAGGACGACCATCAGAGTGGTCTCTCACACAAGCGTGCCTCTCCTACTCAAGAATCCCGAGTACTTTTTCAAAGAAACCAACAGCACTCTTTATGTGATCTGGGGACCTTTTCGAAACATGAGGAAGGATGGAAATGGCATTGTATACAACATGCTGAAGAAAGCTGTTGACAGCTACCCAACTGCCAAAATCTATGTGACAACGGAAAAGCGCATGAGTTACTGCGATGCAGTGTTTAAGAAGGAGACAGGAAAAGACCG
Seq A exon
AGTCCAGTCAGGTTCATATCTCAGTACGGGTTGGTTTACCTTAATTTTGGCTATGGATGCCTGCTATGGAATTCACGTCTATGGGATGATAAATGACACCTACTGCAA
Seq C2 exon
GTCAGAAGGCTTTCGCAAAGTTCCCTACCATTATTACGAGCCAGGAAGAGATGAGTGTGAAGAATACTTTCTGCATGAAAATGCTCCTTATGGAGGCCATAGGTTTATCACAGAAAAAAAAGTATTTGCTAAATGGGCCAAGAAGCACACAATAACATTTACACACCCCAACTGGACGGTATCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009027-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(52.3=100)
A:
PF0077713=Glyco_transf_29=FE(13.8=100)
C2:
PF0077713=Glyco_transf_29=PD(21.9=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTACCCAACTGCCAAA
R:
TGTGTGCTTCTTGGCCCATTT
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]