HsaEX1040770 @ hg38
Exon Skipping
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr6:155013922-155016361:+
Coord C1 exon
chr6:155013922-155014016
Coord A exon
chr6:155014862-155014960
Coord C2 exon
chr6:155016241-155016361
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCCTATGAGAAAAGAAT
3' ss Score
-4.24
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
ACACACACACACACACACACACACACACACACCTGAGATGGGGTAGATCATTGTATTTTTGTGTCTACCAGCAAGAAAAGGAAGGAAAAACTAAG
Seq A exon
AATTTCCTTTAGGCTACAAGCAATGGGGCAGGCTCATGTTGAGTTTGGAGTATGAGTTGTCCGTCAGGAGGCTGGAGAGGCAGACTGGAACAAGAGCTG
Seq C2 exon
TGGCAAAGAATTAGAAACTAAGTGGATGCTTTCGACAGAGGAACAGTTGGATAAGATGTCACACGTCCATGCCTTGGATTTCTGCACTTGACCTGGAAGGATTCCCATGAGAAAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426-'19-31,'19-30,20-31
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACACACACACACACCTGA
R:
TCCTTCCAGGTCAAGTGCAGA
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains