HsaEX7003969 @ hg38
Exon Skipping
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr6:154995354-155090379:+
Coord C1 exon
chr6:154995354-154995492
Coord A exon
chr6:155016241-155016361
Coord C2 exon
chr6:155090289-155090379
Length
121 bp
Sequences
Splice sites
3' ss Seq
TATTGCAGCATTGTTTGTAGTGG
3' ss Score
-0.65
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
ACAGCGCGCGTCCAAGTGGAGAACAAAGTGACCCCCAGAACTTCTCCAACTCCTCCCGGCGTTCCCGCGAGGGCCACGCGCCGAGGGTAGCGGAGGGCGGCGCGCGACCGGCCCCACCGAGCCCGGCGCGCGACCCGAG
Seq A exon
TGGCAAAGAATTAGAAACTAAGTGGATGCTTTCGACAGAGGAACAGTTGGATAAGATGTCACACGTCCATGCCTTGGATTTCTGCACTTGACCTGGAAGGATTCCCATGAGAAAAGAAAAG
Seq C2 exon
GGCTCTGTGTATGAATGACAAGGATACCTTCAGCCAGCTCATTCTGGATGAATGAATGATTACACTAAGTGTCCTCCACATTCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426-'17-39,'17-31,23-39=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTCCAAGTGGAGAACAAA
R:
CACAGAGGAATGTGGAGGACA
Band lengths:
223-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains