HsaEX1041277 @ hg38
Exon Skipping
Gene
ENSG00000165685 | TMEM52B
Description
transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
Coordinates
chr12:10170542-10175522:+
Coord C1 exon
chr12:10170542-10170851
Coord A exon
chr12:10172279-10172416
Coord C2 exon
chr12:10175282-10175522
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGAGTTATGTGTATTGCAGGTG
3' ss Score
8.23
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
AGTGCCATGGCGCCATCTCAGGTCACTGCAACCTCCGCCTCCTGGGTTCGAGTGATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGATTGCAGCCGCGCACCACCACAGCAGGTTAAATTTTGTATTTTTAGTACAGATGAGGTTTCACCGTGCTGGTCTCGAACTCCTGACCTCATGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCTCATCACTCTTAAATAATGAAAAACTAAATTTTTAGAGGAAAAAGAAAATCACAGGACCCTGTGAAGGAAG
Seq A exon
GTGGAGAAAGTGGTGATTCTGAAGGTGTTTCAGGATATTTCGCTAAGTAATTTATGAAAGGGAAAACTATTTTTCATGAGCATCAGAGGAGAGATATTGTACCCACTCTTCAGAGACAGAAACTGAAATTCAAAGAGA
Seq C2 exon
ATTTTTAAAAGCAAGCTTAAATGGATCCTGCAGCCATAGAGAAATAAATTCTGCCTGAGGGAGCTTGCAAGTGAATCTTCCCAGGCTCACCTGAGAATGCATGATGAGAGTGCAACCCAGCAGCCACCTTGACTGCAGCCTTGTGAGACATCAAGCAGAGGACCCAACTAAGTTGTGCCCACACTTCTGACTCACAGATACTTTGAAATAATAAAAGTACATTGTTTTACCTTGCTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165685_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCTCGAACTCCTGACCT
R:
GCCTGGGAAGATTCACTTGCA
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains