HsaINT0118195 @ hg38
Intron Retention
Gene
ENSG00000173391 | OLR1
Description
oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133]
Coordinates
chr12:10169074-10172138:-
Coord C1 exon
chr12:10172002-10172138
Coord A exon
chr12:10169176-10172001
Coord C2 exon
chr12:10169074-10169175
Length
2826 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TCTATCCTCTGTCACTCTAGGTC
3' ss Score
10.41
Exon sequences
Seq C1 exon
ATTTTTAGTTTGTTGAAGTTCGTGACTGCTTCACTCTCTCATTCTTAGCTTGAATTTGGAAATGACTTTTGATGACCTAAAGATCCAGACTGTGAAGGACCAGCCTGATGAGAAGTCAAATGGAAAAAAAGCTAAAG
Seq A exon
GTACTAGGGATGGGAAAATGTGTACAGGGAAAGAATCCCAGTGTTAGCCCCAAAATGTAAATTCACCGAAGAATGGGATTAGAAAGCTAAACACCCAAGTATGGGAAAATAGAATTAATACCATTTACTTAAAAGAAAAACAAGAAGGCTATAATGATGATGATGATGACAACTTATTTATAACAATTTATACTGAGTATTTACTACAGGTTATTCTATATGTTATTCACTTTCAGAGTATTATTTCTCAGAATCTTCGCAATAACATTTTGAGATTGGTACTATTACTATCTCCCTTTTACAGAGAGCTAACTGGGCATCAGGAGGACTAACAACATCATCCAGTTTCACGGAGCTAATAAGTGGTAGAGCTAGGACTGTACCACAAACTCCCATTTATCCAGAATTCTATACATCGGAGGGCTCGGGAACCAAATTTATCTGGTGTATATAACGATAATTTCTGTAAGAGTCCTTCAGGCACTACAAAAACCTGAAGTACCTCATGAATTATGCAGGCAAAGTAAATGATATTCAGTATAGTTTAGCATAAGTTACATTTTGTTGTGTACTACTGCTTTGAAAAATTGTAAGTTCTGTTTGACCCATACAGTAATTAAATTGCATAGCTATAAATTAATTCATAATCCCAATTCCACAGACAATCTGGGTAAATTGCCTTTTATTCTATATCTGTTCTGAGGAAAATGAACAGAATATAAGGAGAGAAAGAGAGACAAGTATTGTCAGAAATTTGGATAAAGAAATTCCAAATTACATTTCCAAAAACAAAACAGAAATTTCTCTCAATAGAGAACATAAGTGTGAGCATGGAGTGATTTAACATTTGAGCCAATGAACTAAATTGCTATAAAAACTGCTGATATTTATAGGTAAAACCAGAAGTGAACAATAGTCATTCGTTTCTTTACTCATTCATTATTTGTGTAGTAAATATTGAGGGTCTGAATTTTACAATAATCATGAGATTGATTTTTCTTTCAGAATCTTGGTTAGATCGGTACCTACTGCAAAGAATCGGATTGGTTTATGATTGGAAAATCACTAGTAGGGGCAGCAGTTGGATTAATGGTCTCTGCCTACCAAGGACACAGGACAAAGAGAATCTATAGAAAAAGGGAACACATACCTTCCTTCACAGGGTCCTGTGATTTTCTTTTTCCTCTAAAAATTTAGTTTTTCATTATTTAAGAGTGATGAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCATGAGGTCAGGAGTTCGAGACCAGCACGGTGAAACCTCATCTGTACTAAAAATACAAAATTTAACCTGCTGTGGTGGTGCGCGGCTGCAATCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATCACTCGAACCCAGGAGGCGGAGGTTGCAGTGACCTGAGATGGCGCCATGGCACTCCAGCCTGGGCGAAGAGCAAGCTCCCCCTCAAAAAAAAAAAAAAAAAAAAGAGCACGATGAGGGTATCTGATGCCCTACAATGTGGAATGAACAGTGACCACAGAGTTGAAAGATTTACATAGAGGTATTTGCCCCTGAGGCTAGAATTAGGCAATTATTTGCAAGAGACACAGCTATCTTCTACAACTTCTCTGCTAGCTTGCCACACACACTCTAGAAGCCAGTAAGTATTGAATCAGAAGATGAACCATATTTATCCCTGTCAAGTTTCTATCTTCTTTTTATCATTTGTGGAGTCTAACACACTACCTTTGACATATGAAAACTTTGAATATATCTGACCACTGCTTGACTGGATCATTATACATTCACACTGGAAATTGTATTATAATATTTCAAGTCATGTAGCTACTGACAATTAGACTAAAGACTTATTTTTGGGTTTTAGCATCTGTGTGATCTTAAGCAAGTCACTAAACCTTTCAGTCTCCTTATTTGCATACAGAGGATAATGATAGGAGTACCTTATTTGTTTATCTCACAAGGTGAGGAAACCAAATACATTGTATGGGATGTTTTCCTACACAACCAGTAATATCTGTGATTTTTTTTTTTTTAGTGGTGGAACACATAATTGTATATTCATACACCTGTGAGCTATGTGATTTTTTTTTCAAAATGGTGAATATTTCTCTTGTAAAATCAAGCCTACACTTGGCGTGAGTGTAGGATATGCTGTTAATATAAGCTAAATTAATATCAAGGTTTCATCCCTACTTTTCTTTGATTAATAACCCCAGTTCCAGGTTGTAATTTTGGTGGACTCATAATTGAATAGCATAAAATTATTCATAAAGTTATTTGAGGTAATCTCAGTTGATTAACTGAAGAAAGCTTGTTTGCTTGATGTCTGATATTTATGTTACTTTTGTGTGCACATGTGTACACGTGGTGTATATTAAAAACTTCAGGCTCTCTGCACTGTGGATGAATTTGATCCAACCAAGCTAGACTGTGAGTTTCTTGAGGAGTAATTGTCGGGAAAGTAGATAAAGTATAAGCTTTAGAATCATATATTTAGATTCAAATATCTGGTATCGAATCCTGGCTCTGAATTTACTGGCTGTGTGACCATGGGTAAATTACTTAAATTCCTTAACTCTCCCTGTTTTCCATTCCTAAATGTGTATGATGAATTATTTGCAGAGCCATTTGGAGGACTAGTGGTATGGAATGCAAACTATTTATGTCTATTTACTAAAACATAAACAGAGTAAATCACCAAGTACAGACAGGCTCCAAGGAATGGTTTGCTTACTTGTTCACTCTTTTTTGTCTTTCTGATTCTATCCTCTGTCACTCTAG
Seq C2 exon
GTCTTCAGTTTCTTTACTCTCCATGGTGGTGCCTGGCTGCTGCGACTCTAGGGGTCCTTTGCCTGGGATTAGTAGTGACCATTATGGTGCTGGGCATGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173391:ENST00000309539:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF039389=OmpH=PU(13.7=76.9),PF101864=Atg14=PU(9.2=53.8)
A:
NA
C2:
PF039389=OmpH=FE(23.3=100),PF101864=Atg14=FE(22.4=100),PF083915=Ly49=PU(23.9=80.0),PF145841=DUF4446=PU(22.2=68.6),PF148511=FAM176=PU(21.2=62.9),PF041117=APG6=PU(16.3=57.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development