HsaINT0118195 @ hg19
Intron Retention
Gene
ENSG00000173391 | OLR1
Description
oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:8133]
Coordinates
chr12:10321673-10324790:-
Coord C1 exon
chr12:10324601-10324790
Coord A exon
chr12:10321775-10324600
Coord C2 exon
chr12:10321673-10321774
Length
2826 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TCTATCCTCTGTCACTCTAGGTC
3' ss Score
10.41
Exon sequences
Seq C1 exon
ATTCTTCTATTAGATAACAGTAGCTATTTAAATACTTCTGCAGAAGCTCACATATTTTTAGTTTGTTGAAGTTCGTGACTGCTTCACTCTCTCATTCTTAGCTTGAATTTGGAAATGACTTTTGATGACCTAAAGATCCAGACTGTGAAGGACCAGCCTGATGAGAAGTCAAATGGAAAAAAAGCTAAAG
Seq A exon
GTACTAGGGATGGGAAAATGTGTACAGGGAAAGAATCCCAGTGTTAGCCCCAAAATGTAAATTCACCGAAGAATGGGATTAGAAAGCTAAACACCCAAGTATGGGAAAATAGAATTAATACCATTTACTTAAAAGAAAAACAAGAAGGCTATAATGATGATGATGATGACAACTTATTTATAACAATTTATACTGAGTATTTACTACAGGTTATTCTATATGTTATTCACTTTCAGAGTATTATTTCTCAGAATCTTCGCAATAACATTTTGAGATTGGTACTATTACTATCTCCCTTTTACAGAGAGCTAACTGGGCATCAGGAGGACTAACAACATCATCCAGTTTCACGGAGCTAATAAGTGGTAGAGCTAGGACTGTACCACAAACTCCCATTTATCCAGAATTCTATACATCGGAGGGCTCGGGAACCAAATTTATCTGGTGTATATAACGATAATTTCTGTAAGAGTCCTTCAGGCACTACAAAAACCTGAAGTACCTCATGAATTATGCAGGCAAAGTAAATGATATTCAGTATAGTTTAGCATAAGTTACATTTTGTTGTGTACTACTGCTTTGAAAAATTGTAAGTTCTGTTTGACCCATACAGTAATTAAATTGCATAGCTATAAATTAATTCATAATCCCAATTCCACAGACAATCTGGGTAAATTGCCTTTTATTCTATATCTGTTCTGAGGAAAATGAACAGAATATAAGGAGAGAAAGAGAGACAAGTATTGTCAGAAATTTGGATAAAGAAATTCCAAATTACATTTCCAAAAACAAAACAGAAATTTCTCTCAATAGAGAACATAAGTGTGAGCATGGAGTGATTTAACATTTGAGCCAATGAACTAAATTGCTATAAAAACTGCTGATATTTATAGGTAAAACCAGAAGTGAACAATAGTCATTCGTTTCTTTACTCATTCATTATTTGTGTAGTAAATATTGAGGGTCTGAATTTTACAATAATCATGAGATTGATTTTTCTTTCAGAATCTTGGTTAGATCGGTACCTACTGCAAAGAATCGGATTGGTTTATGATTGGAAAATCACTAGTAGGGGCAGCAGTTGGATTAATGGTCTCTGCCTACCAAGGACACAGGACAAAGAGAATCTATAGAAAAAGGGAACACATACCTTCCTTCACAGGGTCCTGTGATTTTCTTTTTCCTCTAAAAATTTAGTTTTTCATTATTTAAGAGTGATGAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCATGAGGTCAGGAGTTCGAGACCAGCACGGTGAAACCTCATCTGTACTAAAAATACAAAATTTAACCTGCTGTGGTGGTGCGCGGCTGCAATCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATCACTCGAACCCAGGAGGCGGAGGTTGCAGTGACCTGAGATGGCGCCATGGCACTCCAGCCTGGGCGAAGAGCAAGCTCCCCCTCAAAAAAAAAAAAAAAAAAAAGAGCACGATGAGGGTATCTGATGCCCTACAATGTGGAATGAACAGTGACCACAGAGTTGAAAGATTTACATAGAGGTATTTGCCCCTGAGGCTAGAATTAGGCAATTATTTGCAAGAGACACAGCTATCTTCTACAACTTCTCTGCTAGCTTGCCACACACACTCTAGAAGCCAGTAAGTATTGAATCAGAAGATGAACCATATTTATCCCTGTCAAGTTTCTATCTTCTTTTTATCATTTGTGGAGTCTAACACACTACCTTTGACATATGAAAACTTTGAATATATCTGACCACTGCTTGACTGGATCATTATACATTCACACTGGAAATTGTATTATAATATTTCAAGTCATGTAGCTACTGACAATTAGACTAAAGACTTATTTTTGGGTTTTAGCATCTGTGTGATCTTAAGCAAGTCACTAAACCTTTCAGTCTCCTTATTTGCATACAGAGGATAATGATAGGAGTACCTTATTTGTTTATCTCACAAGGTGAGGAAACCAAATACATTGTATGGGATGTTTTCCTACACAACCAGTAATATCTGTGATTTTTTTTTTTTTAGTGGTGGAACACATAATTGTATATTCATACACCTGTGAGCTATGTGATTTTTTTTTCAAAATGGTGAATATTTCTCTTGTAAAATCAAGCCTACACTTGGCGTGAGTGTAGGATATGCTGTTAATATAAGCTAAATTAATATCAAGGTTTCATCCCTACTTTTCTTTGATTAATAACCCCAGTTCCAGGTTGTAATTTTGGTGGACTCATAATTGAATAGCATAAAATTATTCATAAAGTTATTTGAGGTAATCTCAGTTGATTAACTGAAGAAAGCTTGTTTGCTTGATGTCTGATATTTATGTTACTTTTGTGTGCACATGTGTACACGTGGTGTATATTAAAAACTTCAGGCTCTCTGCACTGTGGATGAATTTGATCCAACCAAGCTAGACTGTGAGTTTCTTGAGGAGTAATTGTCGGGAAAGTAGATAAAGTATAAGCTTTAGAATCATATATTTAGATTCAAATATCTGGTATCGAATCCTGGCTCTGAATTTACTGGCTGTGTGACCATGGGTAAATTACTTAAATTCCTTAACTCTCCCTGTTTTCCATTCCTAAATGTGTATGATGAATTATTTGCAGAGCCATTTGGAGGACTAGTGGTATGGAATGCAAACTATTTATGTCTATTTACTAAAACATAAACAGAGTAAATCACCAAGTACAGACAGGCTCCAAGGAATGGTTTGCTTACTTGTTCACTCTTTTTTGTCTTTCTGATTCTATCCTCTGTCACTCTAG
Seq C2 exon
GTCTTCAGTTTCTTTACTCTCCATGGTGGTGCCTGGCTGCTGCGACTCTAGGGGTCCTTTGCCTGGGATTAGTAGTGACCATTATGGTGCTGGGCATGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173391-OLR1:NM_002543:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF039389=OmpH=PU(14.6=76.9),PF101864=Atg14=PU(8.7=42.3)
A:
NA
C2:
PF083915=Ly49=PU(22.0=80.0),PF108283=DUF2570=PU(25.0=74.3),PF145841=DUF4446=PU(23.3=68.6),PF043759=HemX=FE(22.5=100),PF148511=FAM176=PU(21.4=62.9),PF078897=DUF1664=PU(24.3=74.3),PF055297=Bap31=PU(17.4=45.7),PF130941=CENP-Q=PU(1.6=5.7),PF0149614=V_ATPase_I=PU(6.7=25.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)