MmuINT0113251 @ mm9
Intron Retention
Gene
ENSMUSG00000030162 | Olr1
Description
oxidized low density lipoprotein (lectin-like) receptor 1 [Source:MGI Symbol;Acc:MGI:1261434]
Coordinates
chr6:129452097-129457183:-
Coord C1 exon
chr6:129457053-129457183
Coord A exon
chr6:129452199-129457052
Coord C2 exon
chr6:129452097-129452198
Length
4854 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTCTGATTCTCCTCTGCAGGTC
3' ss Score
12.01
Exon sequences
Seq C1 exon
GGCAGTTGGCTGAGGTCCTCGACTGTTTCAGTTTTTCACTCTTAGCAGGAATTTGGAGATGACTTTTGATGACAAGATGAAGCCTGCGAATGACGAGCCTGATCAGAAGTCATGTGGCAAGAAGCCTAAAG
Seq A exon
GTAACAGGGGTGGGTAGATGCTTATAGAGACAGAATGCCAGGCTTAGCTCAGAAATATAAATTAAATGTACTGAGGAATGAGGTTAGAGGGTAAAGCCATTCAAATATAAGAAAATACAAGAGACCAAGACCATTTATTTAGAAGGAAAGCAAGTAGGATTCAAGATAACAACTAGCTGATACTACATCTTTAGTATAAGCTGTTCTCCATGCTACGGCTTTAAATTAATGCTTTCTACTAATTGTAGTACTTATATTATCTGCCTTCCATATAAAGTTAACTCAGGAGGAGTAATAAAGTCACTCAGTTTCCTTGAATTAATCAGAGTAGAGCCAAAATCATACCAGATTCCCATGTATGAAGAATCCAATCCATAAAAAAAAAAAAATGGGCGAAAATGCATCCATTTAGAGCACACACTAATTGTTTTTATGTGTGTTGCTGAAGTACTGCAAAAATCTGAAGTGCTTTGTGAATTATCTAAAGCAAATTTGGTATATTCAGTATGACTGAATATACGTTAGACTTTCTTGTCCATCATTGCTTTGACCAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGGGTTGGGGGGAGGGTATAGGGGACTTTCAGAGAGAAAACTAGGAAAGGGAATACCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATCCAAAAAAAAGAAATGTAAATGAAGAAAATATCTAATAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAAAAGAAAAATTGTAATTTGTATTTGGCTACTACAGTAAATTGAATTATTTAGGTTTAATTGATAACTCATTTTTGTAGACAACTACAGATAAAATGTCTTTTATTTTATAAAATTAAGAGGAAAAGGCCAGGTGGTGGTGGTGCACACCTTTAATCTTAACACTTGGGAGGCAGAGGCAGGTCAGCCTTCTCTACAGAGTGAGCTTTAGGACAGCCAGGGAAACACAGAGAAACCCAGACTCAGGAAAAAAAGGAACAAAGTATAAGAAGAGGAGGGAAGACAGACTGTGTCTGTAAGTAAGCCTGAAATCTTTCAATGGGTAGGATAAGGGTGAGTGTAGTGTGATTTAATATCTGAGTGGCTGAACTAGCTCAGAGTCAAGAGTGCTGGGGCTTGGTAGTAGAGCCAGCAGCTGTTGAACTAGCTTAGTGTGAGGAAGTGCTGGTGTTTAGTAGTAGATGTAGGAGCTAATGCCAGTTGTTAATTTACTCAACCGGTCACTCATTATTTGTGCAATAAATATTGTTTTTACTTGACTTTTACCATAAATATGATTATTTCTTCTATAAGAGTCCTTGTTAAATTAGGTCCTTGCTGTGAATGGTATAAATTATACACTGAAATTAGTATACAAATCTTTATTGATTGACTAAAGGTTGTTTTCTGACTAGAAAGCCAATAGTCTCCTCCTACTGCTGAGGTGGGATGAAGGTGCCGTTTAAGTAATGGGAGCTTGTATCTTCCTTTCCCATGGCAACTCATGCAATCGGTGTTTTCATTCAGTTGTAGGCATACAATGTGTGATGAATACTGGGGTTCGGGAAGGATTTTTACCTGATGTTAGGTGCCAGGATAAGGCAACTGCTTGTAAGAGATATTACTGTCTTCTATTATCTGCCAGCTAACCACACATTCGGAGAGAGAAATCCTGCAGCCAGAGAATGAGTTCTATTTCTACCTGTCAGAATTCCTTTTTGATATCATCTGTGGATTCTAACACAAACTAACAGAAGAGAACTCTGAACGTATTTGACCACTTGTTAACTTGGACCTTTATCACATTCACACCGAAAGCTCAATGATATAATACTCCAAGCACTTTGGCTTATGAGCATTGGATTAAAGAACAACGTTTAGGGCCAAAGGTGGTACCACATGCCTGATATCCCAACACTGGGGAGGCTGAGTCAAGAGGACCCCCAATCTAAGGCCAGCCTGGGCTACCTACTGAATTCCAGGGAAGCCTGGATTACAAAGTAAATATTATCTTGAGCAAGAACAACATAAAACCCAAAGACCTACGTTTTAAGTTTTCATTATAAATGTGTTATCAAGTAAGCGAAACTGCTGCTTTCAGTCTCTTCTTTATGTAGAGAGAATCACACCAGTGTTCTGCTTATCTTACAGGAGAAGAAACCAAATACATTGTGTGTGATGTTTTCCTCTTGGATCTGTAATGGCTACGGTTATTCAATGTTGGGACACGTAACTGGACAATCACATGTCTGAGAGTTGCATGACTTGTTTTCATAAATAAGGCGGCTTTTCCTCTTGGGATAATAGGCCACACCTAACATAGTGTGAGGCAGTTATTGCTAGAAGCCAAGTGCTCATCAAGGTTTTATTCCTAATTTCCTTTGGTCAATAACTCCAGTTCTAAGAGACAATAAGAACTGAATGGTATAATATTAGGCATGGCATTTCTTGAGGAAATCTCAGGTCACTGACTAAAATATTTTGCTTAACATCTGGCAATTGTCTATATAATGTTACTTATGAGTACGTGTATAAAGCTAAAATTATTTATGGGGGGGTTGTTATCCTCCTTTTGCTTCTTAATATCTTTTGGAGGTTTCTACCTCACTTACGCCTGTTTTACACCCAAGAAAATGACACAAAAACACGGTAAATTTTTTAATTAACTGTAGGTGCTATGATTCTGAGCAATACTAATCCTTCCATGCTGTTAAAAGCCACATGAATGCCCCATGACTTGCCAAATTAAAGTCTCCTGAGAATCTTCTGCTGTAGTTGCCTAATCTCAGAGCAAACTTCTCTTGGCCATGTGCTCCTGGCCCATCCCACTTAATGGCTACCTCCTTCTCCTCCCTCCCCTTCTTCCTTCTTCTCAACACCCCTACCTGAGACCACCCCTACTTGATCTCTAGTCCAACCTTTCTCTCTCTCTCCTGCCAAATCACAGGCCCCAGGCTTTTATTATCAAATCAGAGATTATCCAGTAGCATTCTTTGCCACACATTGGTCAATACAATCCCCATGTCCTGACTGCAACCTGATATTGGTGCACAGAGCTCAGCCTCTGAATACAAGGTGCACAAGGCTAACCCCAACCCCTGTGTATATGTATTTTTAAATGCCAGGGAACAGAATAAGACTCTGGTGATGACTTTAAAGTCTGAGGGTCTCGGGACAGTTCTAGTTCTCTAACTGTACTGAAATACTAATGATAACTTCTAAAAAAAAAAAAATCCTAAAAACTTCCTTGGTCTTTCTGAGGGTAGAAAGCTGCTGGTTTAGGAGATTAACATCTGCAGTTTACAGAGGAGGATTATGCAATGTGGCCTTTGCTCTATCTCAGCAGGAACTGCTCAGCTCTATCTTTCAGCCTGCTAGTCAGAAGTCACAGGAAGAAAAGGGGACACTTAGAAAAGTGATTACAGAGTCTATTACTAAGTTGTAAAAAGTTTCCTATGAAAGCTATCTAAGGGGGAAAGCGGAAAGATCCTAAGAGGGGAAAGGGAAATTTTTTCTAAGTGGGAAAAGGCAAAAAGTTCTAGTAAGGGGAAAAAATTCTTCTAAGGGAAAAAAATTCTCCTCTATCTTCTCTATCTGCTTCTCTTCTCTTTGTCCTCAGTACTTATACTTCTTTCAGAACACATGATCACATGTTACAATGTTCATCACAAGTTCACACAAAAAAATCAAAACATAAATTGAAATATATGTTTACAACAGTGAATGTTTACATGCATATTAATTAGTAGTAATTATCTGGCTAAACATCCATCACCTGTCTCAACTCCACAGGTTCACTGAAGGTTTAAAATCATAGCTAAGTTATTAGTGAAGTTTTATATAGATAACCCAGTCAATATTTTATCTTCTGTCCTAGCACCTATAATAAATCATTAGTTCCCTTTTTATGACCTTTGGTTAATTGTTTTTCAACCTCTTGGAATGTGCTCTGAGTAGGAGAATGTCCGGTTACCATCTAAGAGCAGTTAACTGGTGACACTTGGGAGACTGGCAGAGTTCTCATTGCATTTGACTATCAGAAAAGGACCTAATAGCAGTTCCACTATAAAAGAGCTTAAAAATCACTGGTATAATTTTACGAATTCTTATAGGATCATCATTAAGACTTAAAAGTCATCTCTTTGTCTATATAGCATCACTAGTAGACAGTACGTTTTCATAGGTCTGCAGAGATCTGCTCCAAAGGGCTGGGCTAGTACCTAGTTATTGTTATATATGTTTAATAATAATAGGAAAAGCATATTAATAGCAGGAATCTTTCCTAAAATGAATTCTCTTATGGTCTTGCCTAACAATAGTGAATCTGGCGTAGATTATATAATAATATGAAGCTGACCATCTCAGGAAGATCCCCTGCTAGTTAGTAGCTTGTCCCATTATGGCTCCTGACGTATAACCATCACTCTTTCTGCACAGTAGATGAAGTGGTTAGGCTGTGTTGAGAGGTCTTAGAAGGACACTGTGCATAGAATAGTTGAAGTACAAGAGATTATTCACAGTAAGATGTTTTTGTTTTGCTTCATAATTCCATGTAGGAGTCTAACTACACCTTACACCTTAGAATAGGTGAAGTACAAGCATCAGGATGAAGCATTTAATATCTATACCTCATGAATACCAGCTGTTACTTTTTCCCATGTGAGACCATAAGTAATTTACTTCAGTTCCATATAATCATCCACTGTTCCATCAGCACAGTGGGATTGAGGCCCCAAGGGATGCGGACCACAAAGCAAGCACAGGCACAGACAGGATTCAGTCTTTTCCAATTTTCTGATTCTCCTCTGCAG
Seq C2 exon
GTCTGCATTTGCTTTCTTCCCCATGGTGGTTCCCTGCTGCTATGACTCTGGTCATCCTCTGCCTGGTGTTGTCAGTGACCCTTATTGTACAGTGGACACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030162-Olr1:NM_138648:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: