HsaEX1041379 @ hg38
Exon Skipping
Gene
ENSG00000198092 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:HGNC:29994]
Coordinates
chr4:68073942-68090641:-
Coord C1 exon
chr4:68090523-68090641
Coord A exon
chr4:68074460-68074612
Coord C2 exon
chr4:68073942-68074009
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGAAATCCTGTCTCTCATAGAGA
3' ss Score
7.27
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGATAAGTCTTTCTATTACCTTGCCTCTTTTAAAGTCACAAATATCAAATATAAAGAAAATTATGGCATAAGATCTTCAAGAGAGTTTATAGAAAGGAGTCATCAGATTGAAAGAATG
Seq A exon
AGATGACTAACAAGTGAGGGTGTCAGAGTCACATGGCAGAAGTCATTTCAAGTCATGTCAAATGGTCTAGTGATGACATAATCATTTAAGAAATCAACAAATTCTATCAATACTGGATGAGATGCCATATTTGGGATGAGTGCAGCAAACAAG
Seq C2 exon
ATGTCTAGGATATTTCGACATTCTTCTGTAGGCGGTCGATTTATCAAATCTCATGTTATCAAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198092_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.2=95.0)
A:
NO
C2:
PF0139015=SEA=FE(19.8=100)
Main Inclusion Isoform:
ENST00000356291fB28426
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTTTCTATTACCTTGCCTCT
R:
TTTGATAAATCGACCGCCTACAGA
Band lengths:
162-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains