HsaEX7002629 @ hg38
Exon Skipping
Gene
ENSG00000248049 | UBA6-AS1
Description
UBA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:49083]
Coordinates
chr4:68063062-68080226:+
Coord C1 exon
chr4:68063062-68063221
Coord A exon
chr4:68077279-68077421
Coord C2 exon
chr4:68080121-68080226
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCCACCACATGTAGAGG
3' ss Score
4.67
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTTCCTTGTACTGTATTCTGAACCAAGATCTGGAAGCCCTCCAACATTTTCAAAACAGAACTGCTTATTAATATAGAGAAAAAGAAGCAGCATCAGGATAATAAACACCCAAACAGCTGACAAAAACCCAACTGCCTCTGGAGATACTTTTCTAAAACAG
Seq A exon
AGGAAAAGAAGTGCAGAAAGGAAGAACTGGGAAGTGATGTTGGCCCAGGCAGATTCTAACCCTCTAAGTTCCACAGTCTACAAGCAAGAGTGCATTAAGGCCCACATAGACTGCATTCTCTGTGATTCCAGTGATAACTTAAG
Seq C2 exon
GAAAGCTTCCTGCTGACTCAAAAGGATTTTTCTTCTTCTGAACTCCTATTATGGGAATGGATGAAATCACTTACAGAGCCACAGAAGGAAACAAAGCAAAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000248049-'29-44,'29-42,34-44=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGAGCAGTGGTTTGTAGT
R:
GCAATAACTCCCCATTGGCCT
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains