HsaINT1044671 @ hg38
Intron Retention
Gene
ENSG00000198092 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:HGNC:29994]
Coordinates
chr4:68068618-68070007:-
Coord C1 exon
chr4:68069969-68070007
Coord A exon
chr4:68068820-68069968
Coord C2 exon
chr4:68068618-68068819
Length
1149 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
ATCATGTATTTCTGTGGCAGGCT
3' ss Score
6.29
Exon sequences
Seq C1 exon
CTATTGACAGCAAAAAGATGAGGAATCTTCTCAACAGTC
Seq A exon
GTAAGTTCCAAAACCCACAATTAACTGTTTATTTCACAGTAAAAGATCATGAAAAAAGTTATAGAAAAGTTGGCAGTAAAGTTTACCAAGCTTTTTAAGACTCATTTTATATTTTTGTAAACCGAACACTTAGTCTTTTTATTATTTTTAGCATTTAAGTATTTAAATTTATAAATTTATACCAAATACAATTCTAAGTTTATATGACCTACGAGATGTGGTTAAAAACACCTTACATAATATTCTAGATATTATATTAATATTCATTATAAATAACTTTTAATATTATCTAACAATTCAAGAGAGTGTTTTAAACTGGTAACATTTAGGCTTTAATTTTTTTTTAATTTGCTTGCATTTTTATTGAAATATCTGTTATGTACATTCTCTTGCTCTTCCTGCCCTGCACCCCACATTCCAGCATTGGTACATAGTTAAGGTCTATTGTGGACAAACATGCCCATTAAAAATGTTGTAACACTTTAAGTTCTCTTTTAAGATTGACTTGAAATCTAGTCAATTGAGGGTTTGAAATCAGGGAAGAAGAATTTTTTTTTAAACTAGCCTTTCAAGTTTTAAAAGACCAAAAAGGTCGATAGTGTTTAAATCTGTTAAAATACAGGGCTTTGCAAACACAATAAATTGATTCTCTTTAGTCATTAGTTAAGGGAAAATCATGACCTACAGTTAGTATTGGGCTCTCTCTCAGTAATAAGGATACTGCTACTAGTTTTGGTGTGGATCCTCCTAATTTTGTATCCCACTCTGTCACTTACCAGCTGGGTGACCGCCAGCAATGTTCCCTCTTCAAGGCTTAATTTTCTCATCTAAAAGGTATGTTTCTATAAATACATCTAAGACACATAGCAGAGGATCTATACATTTTTGGTGCTCAATGAATTATCTATATATGCTTTATAAGGAGAGATAGAAGTTAATTCCTGGACTGAATGCCTTGAAATGTTAGTAAACATTTCTTCTGAACCTCAGTAGGATCAGCAAGACCTGTATCAAATAAGCTCAAAGGCTGAGTGCTATGAATGGTTCACATGGTAGCAGGGACAAAGGATTGTCTATAACCAAAGCAAATCAGAATATACTTTTTTCCTCCTTTTTATGAATATGAATGATCATGTATTTCTGTGGCAG
Seq C2 exon
GCTGTGGAATAAGGATGACATCTTCAAACATGCCATTACCAGCATCCTCTTCTACTCAAAGAATTGTCCAAGGAAGGGAAACAGCTATGGAAGGGGAATGGCCATGGCAGGCCAGCCTCCAGCTCATAGGGTCAGGCCATCAGTGTGGAGCCAGCCTCATCAGTAACACATGGCTGCTCACAGCAGCTCACTGCTTTTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198092:ENST00000356291:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.206
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.3=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACAGCAAAAAGATGAGGAATCT
R:
CAGTGAGCTGCTGTGAGC
Band lengths:
230-1379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains