DreINT0007586 @ danRer10
Intron Retention
Gene
ENSDARG00000062758 | CR352265.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QV82]
Coordinates
chr24:21673439-21673826:-
Coord C1 exon
chr24:21673707-21673826
Coord A exon
chr24:21673623-21673706
Coord C2 exon
chr24:21673439-21673622
Length
84 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TTTTTATCCTCCAAATGCAGGTT
3' ss Score
8.4
Exon sequences
Seq C1 exon
TTTCAAAAGGATGCTCCCCCTCCTCCTTCAAATGTGCCAGTGGAAAGTGCTTAAATAAGATGAATCCAGAGTGTGACGGCATCAAAGATTGCAAAGACGGTTCTGATGAGTTACGTTGTG
Seq A exon
GTGAGCATGCTTGAAAAAATGCATAATAAATGCAATTACAGCAAGACTGCGTGCATTATAAAAGTTTTTATCCTCCAAATGCAG
Seq C2 exon
GTTGTGGCACGAGGCCCAGGAAGCGGGCGAAGATTGTGGGTGGCACAGATGCGCAGGCAGGCTCATGGCCGTGGCAGGTCAGCCTTCAGATGGAGCGGTATGGTCATGTGTGTGGAGCTTCTCTGGTGGCCAGTCGCTGGCTCGTGTCTGCTGCTCACTGCTTTCAGGACTCTGATGCCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062758:ENSDART00000091096:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.7)
A:
NA
C2:
PF0008921=Trypsin=PU(21.4=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTGTGACGGCATCAAA
R:
CACACATGACCATACCGCTCC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]