BtaINT0150373 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004412 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:HGNC:29994]
Coordinates
chr6:85486437-85491796:-
Coord C1 exon
chr6:85491758-85491796
Coord A exon
chr6:85486639-85491757
Coord C2 exon
chr6:85486437-85486638
Length
5119 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
AACACTTGTTTCTGTGACAGGCT
3' ss Score
7.23
Exon sequences
Seq C1 exon
CTATCGACAACAAAAAGATGAGGAATTTTCTCAACAGTC
Seq A exon
GTAAGTTCCAAAGCCCATGATTAACTGTCTATTTCATAGCAAAGATAAATAATAAAAGCCCAGAAAGTTGCAAGTAGAATGTACCACATTCTTTTATGAGGTATAATTGATATAACATTGTTTTAGTTTTGAACGTACAATGTATAATTATTTGATATCTGTATTTCAAAATGATCATAACAGTAATACCGAGTTGTTTTTTCTGTTGTAAACCACTTAATCTTTTTATTATGTTTTATTACTGTTGACATTTTAAGACATTTAAATTTATACATTTACACCAAATACAATTTTTAGTGTTTTGACTTACAGAATGTGGTAAAAAATTATATAGCATTCTTGATATTACATACATAACATATGTAGCTATATTTCTAACATCTTGCATGCATATGTGCTAAGTTCCATTAGTCGTGTTCAACTCTTTGTGACCCCATGGCCCATAGCCCTCCAGGTTCCTCTGTCCATGGGATTCTGCAGACAAGAATACTGGCATGGGTTAACATGCCCTTCCCCAGGAAATCTTCCCTACCCAGGGATGAAACCTGCATCTCTATGTCTGTTGCATTGGCAGATGGATTCTTTACCACTAGAGCCACCTGGGAACACCAATTTCACATTTTACTTATCACTAATCTTTACATGGACTTTCTAGGTGACTCGGAGGTAAAGAATCCATGTGCCAATGCAGAAAACACAGGAGATACAGGCTCGATCCCTGGGTCAGGAAGATCCCCTTGAGGAGGAAATGGCAAACCATTCCAGTATTCTTGCCTGGACAATCCAATGGACAGAGGAGCTGGAGGGCTACAGTCCATGAGGTTGCAAAGAGTCAGACATGACTGAGCACCAGCACAAACTTTACATACTCTATTACTAATCTTTTTCAAAACAATATGTTCCATTTTATCCCAACAGTCACAGTCATTTATCCATCACTAAAGTCTCTTGCTTGATTGTTGTTCAGTCACTAAACCATGTCTGATTCTTTGTGACCCAAAGGACAGAAATATGCTAGGCTTCTTTGTCCTTCACTATCTCCCAGACTTTGCTCAGATTCGTGTCTATTGGGTCAGTGATGCTATCTAACCATCTCATCCTCTGACGCTCTCTTCTCCTTTTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCCAGTGTCAGCTCTTCATGTTAGGTGGCCAAAGTGTCGGAACTTCAGCTTCAGGATCAAAGTCTTTTGTTATACTTTTACTATTTCCCTTTCTTGAGTCTTGATTTAAATTCACCCTTTTGCTTGCTAAACTGTATCTTTAAGTTATTTTTCAATAAGACAACTACATAGATGGTGTATTTTTGAGAAATTGCATATATCAGAATCTCTTTTCCATTGCCTTTATCTTTATGTATTATAGGATTCTTGGGTCATAAATTTTCTCAAATAACTATATACATATCATTCCACCTTCTTCTAGTGTTTTCTTATAGAGCAGAAGTCTAAGGCTGGTGTGATTTTTATTCTTTTAGGTTATCTTTTTGGTTCCTGGAAGAAGGTAGGAAATCTTTATCCTATAACATTTTTTTTTTTTTTTTTGTCAAGAGATCTAGATGTGTATTTGACACTGAACCTTGTCTGGGACACTATGAGATTTTCAACTTGTACACTGTTTTTTCTCATCCTGGAAAAATATTCTTCCTTTATAAATTTGATGATTGACTCTGTTTTAATTGGTTTGGTTTTTTTTTTCTTCCTCAGGAACACAAATGATTTATTATCTGAATGTCCATTTACTGAACTCTATGACAATCATTATTTCTAGTTCCAGTTCAGTTTCAGTGCATTATGAAAGATCTCATCTGATCTATACTCCTGACAACCACTTACCTCAATTGCCTGGTGTCACATTTTCTCTTCTTCTGTGTGGATTTATTATCTGTTATGACATTTCTGTGATTTCTTGAATTTTCTTGATTGACATACAGATCTTTTGTTGTGTGTACTCTTATCAGAGTATATTTTCCCCTTATGTTTGGCTACCTTTGTTTTATTAAGGTCATGTTTTCTTGACTATCTTTGCTGATACCAAGCACAAGTTCTGAAAATTTCTGAGGAAAATTTTCAGTGATATGTCTGTCTTCTAAGTTTATATATCATCTGATTTAGAGGATCTTAGCCATGCCATACAGTTAGATGCAGGATTAAATTCAGATTTTAAAAACAGAGTATATGAAAACTACATCAACCACCCACTTTAGGGCACCATCAGCTCCAGCATTCACTGGTGCCAGTTCTCTGTCATTCTCTGTTTAAATTCCTTTTCATAAGTCCAATCACAGCACTATAAAAAAACACCTACCACAGACTGGGTAGTATATAAACAGCAGAAATATATTGCTAATAGTTCCGGAGGCTAGAAGTCCAAGATTGTTGTGAGGTGAGGGCCCACTTCCTACTCATAGATTCTTGCTGTTCAGTCAAGTGGTGGAAGGGGCTAGAGATTCCTCTGCAGACTATTTTATAAGGTACTGACCCATTCATGAGAGCTCCACTCTCATGACTTAAGCACCTCTGGAAGGCTGTACCTACTAATACCACCACCTTTAAGGGTTAGAGATTTCAACTATGGGGAGTACACATTCAGACCATTGCACGAAATAACCACATTTTCATAGAACGTTTCATCTTTCCTGTGTTCCTAGATAAGACGGTGTGCAGGCATTGTGGCTTCTGAATGCATACATAGAGAAAAGAGTTAATGGGTCAAACTAGAGCTTCTGTTTGGCGAGGGACTGGTGAATTACAGCTTTACTTCTGGTGTGGAAAATCACAATATCAGTGGCTTTGTCAGAATTGTTAGCGCTCTCCACAGAGTTCTGGTTCAAAGAAATAGGTTGGGCAGTCCAAGAAGTTGTTTTTTAAACCAACCCACTGAATACTGCAGTTACTGAAAATTACCTCCAAAATGTATATACTTTTTTCTTACCTTTCCTTAATTTTTGGTGATTTTGTTCCTTTTGCCTTTGAGTAATACCATAGACTCAAATTTTTCATTTTCAGTCTGAGGATAATAACATCTAATAACATAGAGAGATAATAACAGAGTTATTAAAATTAGGGCAAGTGTATGTAACACTATGTACAGGGTCTGGATCATAACTAGTAGATATTATTTTTATTATTATTACCTTCACATTTATTTTTAGGGGAAATTGGGAGAGTAAGCATTAGACTCTACTGATGTGGCACCATATTAATGGAGAAACTCTACATGATGGAATTATGATAAATTTATAAATATGATTTCAAGCAACTATTTTTTAATCTGTTCCTGAATAAAACCTCTTTTTAAAAAAGTGTATTGTTAACTAATCTCAAAAATATACAAGCAACTCCTACAGCTCAACTCCAGAAAAATAAATGACCCAATCAAAAAATGGGCCAAAGAACTAAATAGACATTTCTCCAAAGAAGACATACAGATGGCTAACAAACACATGAAAAGATGCTCAACATCACTCATTATCAGAGAAATGCAAATCAAAACCACTATGAGGTACCATTTCACACCAGTCAGAATGGCTGCAATCCAAAAGTCTACAAGCAATAAATGCTGGAGAGGGTGTGGAGAAAAGGGAACTCTCTTACACTGTTGGTGGGAATGCAAACTAGTACAGCCACTATGGAGAACAGTGTGGAGATTCCTTAAAAAACTGGAAATAGAACTGCCTTATGATCCAGCAATCCCACTGCTGGGCATACACACTGAGGAAACCAGAAGGGAAAGAGACATGTGTACCCCAATGTTCATCGCAGCACTGTTTATAATAGCCAGGACATGGAAGCAACCTAGATGCCCATCAGCAGATGAATGGATAAGAAAGCTGTGGTACATATACACAATGGAGTATTACTCAGCCATTAAAAAGAATACATTTGAATCAGTTCTAATGAGATGGATAAAACTGGAACCTATTATATAGAGTGAAGTAAGCCAGAAAGAAAAACACCAATACAGTATACTAACACATATATATGGAATTTAGAAAGATGGTAACAATAACCCGGTGTACGAGACAGCAAAAGAGACACCAATGTATAGATCAGTCTTATGGACTCTGTGGGAGAGGGAGAGGGTGGGGAGATTTGGGAGAATAGCATTGAAACATGTATGATATCATGTATGAAACGAGTCACCAGTCCAGGTTCGATGCACGGTACTGGATGCTTGGGGCTGGTGCACTGGGACGACCCAGAGGGAGGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAATGCGGGTATACCTGTGGCGGATTCATTTCGATATTTGGCAAAACTAATACAATATTGTAAAGTTTAAAAATAAAATAAAACTAAAAAAAAAGTGTATTGTTAATAAAAATATAAACATTAATAATTAGAAGACACATTAATAAAGTATACTAATACACTTCCAGGTATTATTTAGGGTTGAAGTCTAATCAACTGAGAATTTGTTATCAGGGAATCAGAATATGTTAAAAAAAAAAAAACTAGTCTTTTTAAATTTTAGAAAAGCAAGATACTCATTAATATTTAAGATGGTTAAAATTCAGGGCTTTTCAAAGACAATGTACAGATTTATGTCAAGGCAGAATCATGGCTGACATTCAGTGTTGCACTCTCTCAGTAGTAAGAATATAAATTTCGACTTAGATCCTTCTAATCCTTCCAATATACAACTCTGTCTCTTGCCAGCTGTGTTACCTTCAGTAATTTATGTTCTTTTTCCCGGGCTGAGTTTTCTCATTTAAAAAGTGTTTTGCTACACATGTATCTAAAACTCTCAGCAGAGGATCTACACATTTTTATGCTCTTAAATTATCTATTTATCTATTCATCTGTATATGCTCCATATAGAGGCAGAAGTTCATTCTGGTTTGGATACCTTGAAATGTTGGTAAATATTTCTTTTGTACCTCTCTGGGAATAATAGCACCCCTAGAAAATAACCCCAGAGACTGAGTGCTAGAAATGGGTTCAAGAGCAACAGGTTCAATGGACCCTCTAAGCATCTGTGCCCAATGCAAATCAGGGTGTGCTTTTTTCCCCTTGTTTTCATGAAATCAAGGTAACACTTGTTTCTGTGACAG
Seq C2 exon
GCTGTGGAATAAGGATGACACCTTCATACATGCCATTACCAGCATTTGCGTCTACTGAAAGAATTGTCCAAGGAAGTGAAGCAGCTCTGGAAGGGGAGTGGCCGTGGCAGGCCAGCCTCCAGCTCATAGGGGCTGGCCATCAGTGTGGAGCCAGCCTCATCAGTAACACGTGGCTGCTCACTGCAGCTCACTGCTTCCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004412:ENSBTAT00000005785:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.9=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]