MmuINT0162656 @ mm9
Intron Retention
Gene
ENSMUSG00000048764 | Tmprss11f
Description
transmembrane protease, serine 11f [Source:MGI Symbol;Acc:MGI:2442348]
Coordinates
chr5:86962660-86964264:-
Coord C1 exon
chr5:86964226-86964264
Coord A exon
chr5:86962862-86964225
Coord C2 exon
chr5:86962660-86962861
Length
1364 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
ACTGTGTGTTTCTTTGCCAGGAT
3' ss Score
9.83
Exon sequences
Seq C1 exon
CCATTGACAGCAAAAAGATGAGAAATCTTCTCAATAGCC
Seq A exon
GTAAGTTCCAAAATCATTTGTGTATTTCATAATAAACAGAATGGATGATATTTATAAATAACTACTACAGATCACCAACATTTTCTCTTTCTTCTTATACTTTTATAAATCAAATACTTAATTTTTACTTTCTTATTTTTTATACTTAACATATTAGATTTCTATCAATATGATTTTATTCTTTACAGCTTATATATGCTGCATAGTATCCTAGCTAATATATTCTTAAAAGTATCTTTAATACTTCAAGAGAGGTCCAAGTTGAAGTTTTTCTTGTTACTTTTAAGGTTTTATCCTTTTAAGCTTTTGAGGTTTACTTCCTGCTTCACACCTGAATATATTTTGTGTTTCTGTAGGCAAATATGTGCCTATTATCAATATTGTGAGAACATATGCAAGTCTTTTCAAAGGTTGGTTTGAAGTTTGGTCAATAGAAAATTTGATATCAGGGAATAATAATTTTTCTAAAGTACTCTTAAATTTTATAAAATGAAAAAATATTATTTAAATTAAAAATAAATCAATGATAATAAATAGTTTCTTCTTGTTACATGAAGGACAAATTAAGACCTATATTCAGAGTTAACAGAATGGTCAACAGTAAAACAAAAATCCTTTTCTGATCTTCACATGCTGCCATTGGCAGATTACCACAAAGATATTTCATATTTGGAACACAAGCTACTATGCAGAATATTTTCCCTAGTCTAACTATACCTTAGAGTTATGAGGCACACCAGATTGGTCAGTTTGTTTTTTGAGTTAGACTTGCAAAATTTAAGATTATCTGAGTTTTTGTTAGTTTCTGACCTGTGAGCTTGCCCCAATCCCATCTATCTTCCTCAAAGGATGTTAAGCTTCTCATCCTCATTTGACATTAAAAACCCAGGGCCACCTTCCCTTGGTAGAATACTTGGTCTGTCTAGCTGACTTCACTTTTCAGCTTCCAAATCTATTATTCATACAACTAAAACAGTTTTCATTTTGCTTGTCTTCTAAGGTCATTTATTATGTTTTGCTCATATTATCTAGCTACACTGTTTCTTTGTAAGAGACTTATTTTACAGCCCTGGCTGGCTTCAGACTGACAAAATTCCTGTATAGGCAGCTCAAATGCTGGGATTACTAAAATGTGCCAAGATGCCAGGCTGTATAGGATTTAGGCAGAGATCCGGAAATTGCGTTCTGAACTAAATTCCTAAGCAAAAAGATAAATATTGCTTTTGAATCTCAGGGCAATCAACCCAATCCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCAGAGACTGTGTACTAAGGACAGGTTAAAAAGTTACTGAGGTAAAGAATTTTCTTTAAACTGTGTGTTTCTTTGCCAG
Seq C2 exon
GATGTGGGATAAGAATGTCATCTTCAAACATCCCATTACCAGCATCCTCTTCTACTGAACGCATTGTCCAAGGGAGGGAAACAGCTATGGAAGGAGAGTGGCCATGGCAGGCTAGCCTCCAGCTCATTGGGGCTGGCCATCAGTGTGGAGCCACACTCATCAGCAACACATGGCTGCTCACAGCAGCTCATTGCTTCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048764-Tmprss11f:NM_178730:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.3=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGACAGCAAAAAGATGAGA
R:
GCAATGAGCTGCTGTGAGC
Band lengths:
233-1597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: